Protein–RNA interactions for Protein: Q96PN7

TRERF1, Transcriptional-regulating factor 1, humanhuman

Predictions only

Length 1,200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRERF1Q96PN7 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC20.77■□□□□ 0.92
TRERF1Q96PN7 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC20.77■□□□□ 0.92
TRERF1Q96PN7 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC20.77■□□□□ 0.92
TRERF1Q96PN7 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC20.77■□□□□ 0.92
TRERF1Q96PN7 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC20.77■□□□□ 0.92
TRERF1Q96PN7 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC20.77■□□□□ 0.92
TRERF1Q96PN7 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
TRERF1Q96PN7 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC20.77■□□□□ 0.92
TRERF1Q96PN7 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
TRERF1Q96PN7 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
TRERF1Q96PN7 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
TRERF1Q96PN7 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
TRERF1Q96PN7 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC20.77■□□□□ 0.91
TRERF1Q96PN7 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
TRERF1Q96PN7 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
TRERF1Q96PN7 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC20.77■□□□□ 0.91
TRERF1Q96PN7 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
TRERF1Q96PN7 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC20.76■□□□□ 0.91
TRERF1Q96PN7 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC20.76■□□□□ 0.91
TRERF1Q96PN7 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
TRERF1Q96PN7 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
TRERF1Q96PN7 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
TRERF1Q96PN7 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
TRERF1Q96PN7 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
TRERF1Q96PN7 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC20.76■□□□□ 0.91
TRERF1Q96PN7 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
TRERF1Q96PN7 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
TRERF1Q96PN7 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC20.76■□□□□ 0.91
TRERF1Q96PN7 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC20.76■□□□□ 0.91
TRERF1Q96PN7 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC20.76■□□□□ 0.91
TRERF1Q96PN7 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC20.76■□□□□ 0.91
TRERF1Q96PN7 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC20.76■□□□□ 0.91
TRERF1Q96PN7 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
TRERF1Q96PN7 AC114341.1-201ENST00000618070 349 ntBASIC20.76■□□□□ 0.91
TRERF1Q96PN7 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC20.76■□□□□ 0.91
TRERF1Q96PN7 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
TRERF1Q96PN7 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
TRERF1Q96PN7 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
TRERF1Q96PN7 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
TRERF1Q96PN7 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
TRERF1Q96PN7 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
TRERF1Q96PN7 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC20.76■□□□□ 0.91
TRERF1Q96PN7 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC20.76■□□□□ 0.91
TRERF1Q96PN7 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC20.76■□□□□ 0.91
TRERF1Q96PN7 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC20.76■□□□□ 0.91
TRERF1Q96PN7 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
TRERF1Q96PN7 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC20.76■□□□□ 0.91
TRERF1Q96PN7 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
TRERF1Q96PN7 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
TRERF1Q96PN7 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
TRERF1Q96PN7 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
TRERF1Q96PN7 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC20.75■□□□□ 0.91
TRERF1Q96PN7 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
TRERF1Q96PN7 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
TRERF1Q96PN7 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
TRERF1Q96PN7 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC20.75■□□□□ 0.91
TRERF1Q96PN7 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
TRERF1Q96PN7 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
TRERF1Q96PN7 EMD-201ENST00000369835 966 ntTSL 3 BASIC20.75■□□□□ 0.91
TRERF1Q96PN7 MRPL3P1-201ENST00000400109 1033 ntBASIC20.75■□□□□ 0.91
TRERF1Q96PN7 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
TRERF1Q96PN7 SLC25A6P4-201ENST00000586535 553 ntBASIC20.75■□□□□ 0.91
TRERF1Q96PN7 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC20.75■□□□□ 0.91
TRERF1Q96PN7 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
TRERF1Q96PN7 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC20.75■□□□□ 0.91
TRERF1Q96PN7 VPS51-217ENST00000639871 243 ntTSL 5 BASIC20.75■□□□□ 0.91
TRERF1Q96PN7 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC20.75■□□□□ 0.91
TRERF1Q96PN7 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC20.75■□□□□ 0.91
TRERF1Q96PN7 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC20.75■□□□□ 0.91
TRERF1Q96PN7 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
TRERF1Q96PN7 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
TRERF1Q96PN7 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC20.75■□□□□ 0.91
TRERF1Q96PN7 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC20.75■□□□□ 0.91
TRERF1Q96PN7 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC20.75■□□□□ 0.91
TRERF1Q96PN7 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC20.75■□□□□ 0.91
TRERF1Q96PN7 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC20.75■□□□□ 0.91
TRERF1Q96PN7 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
TRERF1Q96PN7 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
TRERF1Q96PN7 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC20.74■□□□□ 0.91
TRERF1Q96PN7 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC20.74■□□□□ 0.91
TRERF1Q96PN7 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
TRERF1Q96PN7 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
TRERF1Q96PN7 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
TRERF1Q96PN7 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
TRERF1Q96PN7 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC20.74■□□□□ 0.91
TRERF1Q96PN7 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
TRERF1Q96PN7 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC20.74■□□□□ 0.91
TRERF1Q96PN7 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC20.74■□□□□ 0.91
TRERF1Q96PN7 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
TRERF1Q96PN7 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
TRERF1Q96PN7 CCS-201ENST00000310190 942 ntTSL 5 BASIC20.74■□□□□ 0.91
TRERF1Q96PN7 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
TRERF1Q96PN7 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
TRERF1Q96PN7 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
TRERF1Q96PN7 RCN1P2-201ENST00000398357 915 ntBASIC20.74■□□□□ 0.91
TRERF1Q96PN7 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
TRERF1Q96PN7 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC20.74■□□□□ 0.91
TRERF1Q96PN7 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC20.74■□□□□ 0.91
TRERF1Q96PN7 AC106795.1-205ENST00000512851 1056 ntBASIC20.74■□□□□ 0.91
TRERF1Q96PN7 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC20.74■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms