Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 BOC-212ENST00000485230 2173 ntTSL 2 BASIC19.34■□□□□ 0.69
CCDC42Q96M95 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CCDC42Q96M95 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CCDC42Q96M95 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC19.34■□□□□ 0.69
CCDC42Q96M95 LINC00602-201ENST00000629776 2065 ntBASIC19.34■□□□□ 0.69
CCDC42Q96M95 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CCDC42Q96M95 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
CCDC42Q96M95 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CCDC42Q96M95 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC19.34■□□□□ 0.69
CCDC42Q96M95 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC19.34■□□□□ 0.69
CCDC42Q96M95 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC19.34■□□□□ 0.69
CCDC42Q96M95 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
CCDC42Q96M95 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CCDC42Q96M95 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC19.34■□□□□ 0.69
CCDC42Q96M95 FITM1-202ENST00000559294 800 ntBASIC19.34■□□□□ 0.69
CCDC42Q96M95 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC19.34■□□□□ 0.69
CCDC42Q96M95 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CCDC42Q96M95 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CCDC42Q96M95 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CCDC42Q96M95 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CCDC42Q96M95 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC19.34■□□□□ 0.69
CCDC42Q96M95 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC19.34■□□□□ 0.69
CCDC42Q96M95 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC19.34■□□□□ 0.69
CCDC42Q96M95 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC19.34■□□□□ 0.69
CCDC42Q96M95 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC19.34■□□□□ 0.69
CCDC42Q96M95 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
CCDC42Q96M95 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.69
CCDC42Q96M95 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
CCDC42Q96M95 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.69
CCDC42Q96M95 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
CCDC42Q96M95 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
CCDC42Q96M95 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC19.33■□□□□ 0.69
CCDC42Q96M95 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC19.33■□□□□ 0.69
CCDC42Q96M95 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC19.33■□□□□ 0.69
CCDC42Q96M95 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC19.33■□□□□ 0.69
CCDC42Q96M95 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
CCDC42Q96M95 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
CCDC42Q96M95 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.69
CCDC42Q96M95 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC19.33■□□□□ 0.68
CCDC42Q96M95 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CCDC42Q96M95 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC19.33■□□□□ 0.68
CCDC42Q96M95 GXYLT1P6-201ENST00000456472 1187 ntBASIC19.33■□□□□ 0.68
CCDC42Q96M95 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
CCDC42Q96M95 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC19.33■□□□□ 0.68
CCDC42Q96M95 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC19.33■□□□□ 0.68
CCDC42Q96M95 AP000525.1-201ENST00000608286 694 ntBASIC19.33■□□□□ 0.68
CCDC42Q96M95 AC010653.2-201ENST00000623505 997 ntBASIC19.33■□□□□ 0.68
CCDC42Q96M95 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
CCDC42Q96M95 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC19.33■□□□□ 0.68
CCDC42Q96M95 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC19.33■□□□□ 0.68
CCDC42Q96M95 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
CCDC42Q96M95 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC19.33■□□□□ 0.68
CCDC42Q96M95 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CCDC42Q96M95 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CCDC42Q96M95 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
CCDC42Q96M95 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC19.32■□□□□ 0.68
CCDC42Q96M95 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC42Q96M95 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC42Q96M95 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC42Q96M95 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC42Q96M95 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
CCDC42Q96M95 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC42Q96M95 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC42Q96M95 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC19.32■□□□□ 0.68
CCDC42Q96M95 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC19.32■□□□□ 0.68
CCDC42Q96M95 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC19.32■□□□□ 0.68
CCDC42Q96M95 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC42Q96M95 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC42Q96M95 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC19.32■□□□□ 0.68
CCDC42Q96M95 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC42Q96M95 AL390955.1-201ENST00000428694 934 ntBASIC19.32■□□□□ 0.68
CCDC42Q96M95 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC19.32■□□□□ 0.68
CCDC42Q96M95 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC19.32■□□□□ 0.68
CCDC42Q96M95 C2orf69P3-201ENST00000565542 1120 ntBASIC19.32■□□□□ 0.68
CCDC42Q96M95 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC42Q96M95 AC008687.5-201ENST00000593746 558 ntBASIC19.32■□□□□ 0.68
CCDC42Q96M95 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC19.32■□□□□ 0.68
CCDC42Q96M95 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC42Q96M95 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC42Q96M95 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC42Q96M95 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC42Q96M95 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
CCDC42Q96M95 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC19.32■□□□□ 0.68
CCDC42Q96M95 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC19.32■□□□□ 0.68
CCDC42Q96M95 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC19.32■□□□□ 0.68
CCDC42Q96M95 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC19.32■□□□□ 0.68
CCDC42Q96M95 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
CCDC42Q96M95 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
CCDC42Q96M95 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC19.31■□□□□ 0.68
CCDC42Q96M95 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
CCDC42Q96M95 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC19.31■□□□□ 0.68
CCDC42Q96M95 CROCCP2-202ENST00000412962 2773 ntBASIC19.31■□□□□ 0.68
CCDC42Q96M95 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CCDC42Q96M95 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CCDC42Q96M95 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
CCDC42Q96M95 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
CCDC42Q96M95 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC19.31■□□□□ 0.68
CCDC42Q96M95 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CCDC42Q96M95 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CCDC42Q96M95 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms