Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SLC44A3Q8N4M1 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SLC44A3Q8N4M1 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
SLC44A3Q8N4M1 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
SLC44A3Q8N4M1 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC18.27■□□□□ 0.51
SLC44A3Q8N4M1 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.51
SLC44A3Q8N4M1 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC18.27■□□□□ 0.51
SLC44A3Q8N4M1 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC18.27■□□□□ 0.51
SLC44A3Q8N4M1 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.51
SLC44A3Q8N4M1 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
SLC44A3Q8N4M1 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
SLC44A3Q8N4M1 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SLC44A3Q8N4M1 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC18.26■□□□□ 0.51
SLC44A3Q8N4M1 AC006504.4-201ENST00000592118 1568 ntBASIC18.26■□□□□ 0.51
SLC44A3Q8N4M1 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
SLC44A3Q8N4M1 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
SLC44A3Q8N4M1 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC18.26■□□□□ 0.51
SLC44A3Q8N4M1 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SLC44A3Q8N4M1 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC18.26■□□□□ 0.51
SLC44A3Q8N4M1 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SLC44A3Q8N4M1 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SLC44A3Q8N4M1 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SLC44A3Q8N4M1 CD82-202ENST00000342935 967 ntTSL 5 BASIC18.26■□□□□ 0.51
SLC44A3Q8N4M1 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SLC44A3Q8N4M1 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SLC44A3Q8N4M1 AC018845.2-201ENST00000568326 409 ntBASIC18.26■□□□□ 0.51
SLC44A3Q8N4M1 AC092364.2-202ENST00000597012 1073 ntBASIC18.26■□□□□ 0.51
SLC44A3Q8N4M1 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC18.26■□□□□ 0.51
SLC44A3Q8N4M1 AC073592.5-201ENST00000624854 528 ntBASIC18.26■□□□□ 0.51
SLC44A3Q8N4M1 KRT8P47-201ENST00000604727 1398 ntBASIC18.26■□□□□ 0.51
SLC44A3Q8N4M1 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SLC44A3Q8N4M1 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
SLC44A3Q8N4M1 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SLC44A3Q8N4M1 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
SLC44A3Q8N4M1 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC18.25■□□□□ 0.51
SLC44A3Q8N4M1 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC18.25■□□□□ 0.51
SLC44A3Q8N4M1 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SLC44A3Q8N4M1 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC18.25■□□□□ 0.51
SLC44A3Q8N4M1 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
SLC44A3Q8N4M1 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC18.25■□□□□ 0.51
SLC44A3Q8N4M1 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC18.25■□□□□ 0.51
SLC44A3Q8N4M1 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SLC44A3Q8N4M1 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC18.25■□□□□ 0.51
SLC44A3Q8N4M1 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SLC44A3Q8N4M1 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC18.25■□□□□ 0.51
SLC44A3Q8N4M1 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SLC44A3Q8N4M1 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
SLC44A3Q8N4M1 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SLC44A3Q8N4M1 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC18.25■□□□□ 0.51
SLC44A3Q8N4M1 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC18.25■□□□□ 0.51
SLC44A3Q8N4M1 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SLC44A3Q8N4M1 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SLC44A3Q8N4M1 MKNK2P1-201ENST00000437526 628 ntBASIC18.25■□□□□ 0.51
SLC44A3Q8N4M1 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC18.25■□□□□ 0.51
SLC44A3Q8N4M1 HCG4B-203ENST00000450128 991 ntBASIC18.25■□□□□ 0.51
SLC44A3Q8N4M1 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC18.25■□□□□ 0.51
SLC44A3Q8N4M1 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC18.25■□□□□ 0.51
SLC44A3Q8N4M1 AL513190.1-201ENST00000621254 727 ntBASIC18.25■□□□□ 0.51
SLC44A3Q8N4M1 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SLC44A3Q8N4M1 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SLC44A3Q8N4M1 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC18.25■□□□□ 0.51
SLC44A3Q8N4M1 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SLC44A3Q8N4M1 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SLC44A3Q8N4M1 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SLC44A3Q8N4M1 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SLC44A3Q8N4M1 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC18.25■□□□□ 0.51
SLC44A3Q8N4M1 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC18.25■□□□□ 0.51
SLC44A3Q8N4M1 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SLC44A3Q8N4M1 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
SLC44A3Q8N4M1 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
SLC44A3Q8N4M1 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SLC44A3Q8N4M1 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SLC44A3Q8N4M1 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
SLC44A3Q8N4M1 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC18.24■□□□□ 0.51
SLC44A3Q8N4M1 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
SLC44A3Q8N4M1 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
SLC44A3Q8N4M1 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC18.24■□□□□ 0.51
SLC44A3Q8N4M1 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC18.24■□□□□ 0.51
SLC44A3Q8N4M1 AL020989.1-201ENST00000422979 469 ntBASIC18.24■□□□□ 0.51
SLC44A3Q8N4M1 AC108073.2-201ENST00000464002 357 ntBASIC18.24■□□□□ 0.51
SLC44A3Q8N4M1 ARTN-206ENST00000472435 402 ntTSL 3 BASIC18.24■□□□□ 0.51
SLC44A3Q8N4M1 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC18.24■□□□□ 0.51
SLC44A3Q8N4M1 MAL2-202ENST00000531508 892 ntTSL 3 BASIC18.24■□□□□ 0.51
SLC44A3Q8N4M1 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC18.24■□□□□ 0.51
SLC44A3Q8N4M1 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC18.24■□□□□ 0.51
SLC44A3Q8N4M1 MIR4751-201ENST00000578027 74 ntBASIC18.24■□□□□ 0.51
SLC44A3Q8N4M1 CYB561-217ENST00000582997 877 ntTSL 5 BASIC18.24■□□□□ 0.51
SLC44A3Q8N4M1 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SLC44A3Q8N4M1 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SLC44A3Q8N4M1 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SLC44A3Q8N4M1 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC18.24■□□□□ 0.51
SLC44A3Q8N4M1 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC18.24■□□□□ 0.51
SLC44A3Q8N4M1 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
SLC44A3Q8N4M1 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.51
SLC44A3Q8N4M1 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SLC44A3Q8N4M1 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
SLC44A3Q8N4M1 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC18.24■□□□□ 0.51
SLC44A3Q8N4M1 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
SLC44A3Q8N4M1 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
SLC44A3Q8N4M1 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms