Protein–RNA interactions for Protein: Q7Z3V4

UBE3B, Ubiquitin-protein ligase E3B, humanhuman

Predictions only

Length 1,068 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3BQ7Z3V4 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
UBE3BQ7Z3V4 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC22.27■■□□□ 1.16
UBE3BQ7Z3V4 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
UBE3BQ7Z3V4 CD9-202ENST00000382515 1229 ntTSL 5 BASIC22.27■■□□□ 1.16
UBE3BQ7Z3V4 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC22.27■■□□□ 1.16
UBE3BQ7Z3V4 AL022342.1-201ENST00000400363 863 ntBASIC22.27■■□□□ 1.16
UBE3BQ7Z3V4 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC22.27■■□□□ 1.16
UBE3BQ7Z3V4 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC22.27■■□□□ 1.16
UBE3BQ7Z3V4 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC22.27■■□□□ 1.16
UBE3BQ7Z3V4 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
UBE3BQ7Z3V4 AC021087.4-201ENST00000563761 564 ntBASIC22.27■■□□□ 1.16
UBE3BQ7Z3V4 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC22.27■■□□□ 1.16
UBE3BQ7Z3V4 AL049840.3-201ENST00000602669 611 ntBASIC22.27■■□□□ 1.16
UBE3BQ7Z3V4 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
UBE3BQ7Z3V4 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC22.27■■□□□ 1.16
UBE3BQ7Z3V4 AP000867.4-201ENST00000641616 219 ntBASIC22.27■■□□□ 1.16
UBE3BQ7Z3V4 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC22.27■■□□□ 1.16
UBE3BQ7Z3V4 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
UBE3BQ7Z3V4 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC22.26■■□□□ 1.15
UBE3BQ7Z3V4 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC22.26■■□□□ 1.15
UBE3BQ7Z3V4 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC22.26■■□□□ 1.15
UBE3BQ7Z3V4 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC22.26■■□□□ 1.15
UBE3BQ7Z3V4 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
UBE3BQ7Z3V4 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC22.26■■□□□ 1.15
UBE3BQ7Z3V4 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
UBE3BQ7Z3V4 EFTUD1P1-204ENST00000560401 1798 ntBASIC22.26■■□□□ 1.15
UBE3BQ7Z3V4 SOD2-201ENST00000337404 991 ntTSL 2 BASIC22.26■■□□□ 1.15
UBE3BQ7Z3V4 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
UBE3BQ7Z3V4 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC22.26■■□□□ 1.15
UBE3BQ7Z3V4 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
UBE3BQ7Z3V4 SCARNA2-201ENST00000458748 420 ntBASIC22.26■■□□□ 1.15
UBE3BQ7Z3V4 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC22.26■■□□□ 1.15
UBE3BQ7Z3V4 AC073648.2-201ENST00000510116 352 ntBASIC22.26■■□□□ 1.15
UBE3BQ7Z3V4 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC22.26■■□□□ 1.15
UBE3BQ7Z3V4 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
UBE3BQ7Z3V4 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC22.26■■□□□ 1.15
UBE3BQ7Z3V4 MED29-202ENST00000594368 1471 ntTSL 2 BASIC22.26■■□□□ 1.15
UBE3BQ7Z3V4 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC22.26■■□□□ 1.15
UBE3BQ7Z3V4 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
UBE3BQ7Z3V4 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC22.26■■□□□ 1.15
UBE3BQ7Z3V4 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
UBE3BQ7Z3V4 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC22.25■■□□□ 1.15
UBE3BQ7Z3V4 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
UBE3BQ7Z3V4 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC22.25■■□□□ 1.15
UBE3BQ7Z3V4 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC22.25■■□□□ 1.15
UBE3BQ7Z3V4 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
UBE3BQ7Z3V4 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
UBE3BQ7Z3V4 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
UBE3BQ7Z3V4 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
UBE3BQ7Z3V4 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
UBE3BQ7Z3V4 AL590627.1-203ENST00000421194 1026 ntBASIC22.25■■□□□ 1.15
UBE3BQ7Z3V4 PON3-205ENST00000451904 1053 ntTSL 3 BASIC22.25■■□□□ 1.15
UBE3BQ7Z3V4 AC122714.2-201ENST00000502787 707 ntBASIC22.25■■□□□ 1.15
UBE3BQ7Z3V4 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC22.25■■□□□ 1.15
UBE3BQ7Z3V4 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC22.25■■□□□ 1.15
UBE3BQ7Z3V4 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC22.25■■□□□ 1.15
UBE3BQ7Z3V4 AC120114.3-201ENST00000611923 658 ntBASIC22.25■■□□□ 1.15
UBE3BQ7Z3V4 MIR7706-201ENST00000613747 67 ntBASIC22.25■■□□□ 1.15
UBE3BQ7Z3V4 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC22.25■■□□□ 1.15
UBE3BQ7Z3V4 AL020996.1-203ENST00000536896 2307 ntBASIC22.25■■□□□ 1.15
UBE3BQ7Z3V4 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
UBE3BQ7Z3V4 AL356309.3-201ENST00000624132 1934 ntBASIC22.25■■□□□ 1.15
UBE3BQ7Z3V4 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
UBE3BQ7Z3V4 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
UBE3BQ7Z3V4 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
UBE3BQ7Z3V4 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
UBE3BQ7Z3V4 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
UBE3BQ7Z3V4 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC22.25■■□□□ 1.15
UBE3BQ7Z3V4 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC22.25■■□□□ 1.15
UBE3BQ7Z3V4 STK4-201ENST00000372801 2038 ntTSL 2 BASIC22.24■■□□□ 1.15
UBE3BQ7Z3V4 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC22.24■■□□□ 1.15
UBE3BQ7Z3V4 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
UBE3BQ7Z3V4 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC22.24■■□□□ 1.15
UBE3BQ7Z3V4 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC22.24■■□□□ 1.15
UBE3BQ7Z3V4 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC22.24■■□□□ 1.15
UBE3BQ7Z3V4 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC22.24■■□□□ 1.15
UBE3BQ7Z3V4 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
UBE3BQ7Z3V4 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
UBE3BQ7Z3V4 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC22.24■■□□□ 1.15
UBE3BQ7Z3V4 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC22.24■■□□□ 1.15
UBE3BQ7Z3V4 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC22.24■■□□□ 1.15
UBE3BQ7Z3V4 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
UBE3BQ7Z3V4 ABBA01031661.1-201ENST00000634362 1253 ntBASIC22.24■■□□□ 1.15
UBE3BQ7Z3V4 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC22.24■■□□□ 1.15
UBE3BQ7Z3V4 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC22.24■■□□□ 1.15
UBE3BQ7Z3V4 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC22.24■■□□□ 1.15
UBE3BQ7Z3V4 SIRPAP1-201ENST00000448467 1770 ntBASIC22.24■■□□□ 1.15
UBE3BQ7Z3V4 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC22.24■■□□□ 1.15
UBE3BQ7Z3V4 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
UBE3BQ7Z3V4 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
UBE3BQ7Z3V4 AC009949.1-201ENST00000623048 1830 ntBASIC22.24■■□□□ 1.15
UBE3BQ7Z3V4 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
UBE3BQ7Z3V4 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
UBE3BQ7Z3V4 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
UBE3BQ7Z3V4 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC22.23■■□□□ 1.15
UBE3BQ7Z3V4 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
UBE3BQ7Z3V4 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
UBE3BQ7Z3V4 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC22.23■■□□□ 1.15
UBE3BQ7Z3V4 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
UBE3BQ7Z3V4 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC22.23■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms