Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
RNFT1Q5M7Z0 PMPCAP1-201ENST00000508114 1576 ntBASIC16.08■□□□□ 0.16
RNFT1Q5M7Z0 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.16
RNFT1Q5M7Z0 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
RNFT1Q5M7Z0 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
RNFT1Q5M7Z0 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
RNFT1Q5M7Z0 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
RNFT1Q5M7Z0 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC16.08■□□□□ 0.16
RNFT1Q5M7Z0 AC018445.3-201ENST00000624177 1945 ntBASIC16.07■□□□□ 0.16
RNFT1Q5M7Z0 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
RNFT1Q5M7Z0 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
RNFT1Q5M7Z0 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC16.07■□□□□ 0.16
RNFT1Q5M7Z0 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
RNFT1Q5M7Z0 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
RNFT1Q5M7Z0 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
RNFT1Q5M7Z0 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
RNFT1Q5M7Z0 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC16.07■□□□□ 0.16
RNFT1Q5M7Z0 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
RNFT1Q5M7Z0 MIR940-201ENST00000401276 94 ntBASIC16.07■□□□□ 0.16
RNFT1Q5M7Z0 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
RNFT1Q5M7Z0 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
RNFT1Q5M7Z0 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC16.07■□□□□ 0.16
RNFT1Q5M7Z0 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC16.07■□□□□ 0.16
RNFT1Q5M7Z0 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC16.07■□□□□ 0.16
RNFT1Q5M7Z0 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC16.07■□□□□ 0.16
RNFT1Q5M7Z0 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
RNFT1Q5M7Z0 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
RNFT1Q5M7Z0 GPALPP1-207ENST00000611650 899 ntBASIC16.07■□□□□ 0.16
RNFT1Q5M7Z0 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
RNFT1Q5M7Z0 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC16.07■□□□□ 0.16
RNFT1Q5M7Z0 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC16.07■□□□□ 0.16
RNFT1Q5M7Z0 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
RNFT1Q5M7Z0 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
RNFT1Q5M7Z0 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
RNFT1Q5M7Z0 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
RNFT1Q5M7Z0 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
RNFT1Q5M7Z0 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC16.07■□□□□ 0.16
RNFT1Q5M7Z0 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
RNFT1Q5M7Z0 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
RNFT1Q5M7Z0 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC16.07■□□□□ 0.16
RNFT1Q5M7Z0 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
RNFT1Q5M7Z0 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
RNFT1Q5M7Z0 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
RNFT1Q5M7Z0 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
RNFT1Q5M7Z0 AC004817.3-201ENST00000602957 2129 ntBASIC16.07■□□□□ 0.16
RNFT1Q5M7Z0 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
RNFT1Q5M7Z0 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC16.07■□□□□ 0.16
RNFT1Q5M7Z0 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
RNFT1Q5M7Z0 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC16.07■□□□□ 0.16
RNFT1Q5M7Z0 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
RNFT1Q5M7Z0 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
RNFT1Q5M7Z0 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
RNFT1Q5M7Z0 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
RNFT1Q5M7Z0 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC16.06■□□□□ 0.16
RNFT1Q5M7Z0 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
RNFT1Q5M7Z0 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
RNFT1Q5M7Z0 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
RNFT1Q5M7Z0 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC16.06■□□□□ 0.16
RNFT1Q5M7Z0 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
RNFT1Q5M7Z0 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
RNFT1Q5M7Z0 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
RNFT1Q5M7Z0 HLA-J-201ENST00000462773 1622 ntBASIC16.06■□□□□ 0.16
RNFT1Q5M7Z0 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
RNFT1Q5M7Z0 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
RNFT1Q5M7Z0 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
RNFT1Q5M7Z0 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
RNFT1Q5M7Z0 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC16.06■□□□□ 0.16
RNFT1Q5M7Z0 AC092910.1-201ENST00000482027 1129 ntBASIC16.06■□□□□ 0.16
RNFT1Q5M7Z0 AC122714.2-201ENST00000502787 707 ntBASIC16.06■□□□□ 0.16
RNFT1Q5M7Z0 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC16.06■□□□□ 0.16
RNFT1Q5M7Z0 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC16.06■□□□□ 0.16
RNFT1Q5M7Z0 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC16.06■□□□□ 0.16
RNFT1Q5M7Z0 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC16.06■□□□□ 0.16
RNFT1Q5M7Z0 PIN1-206ENST00000587625 878 ntTSL 2 BASIC16.06■□□□□ 0.16
RNFT1Q5M7Z0 AD001527.2-201ENST00000622994 785 ntBASIC16.06■□□□□ 0.16
RNFT1Q5M7Z0 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC16.06■□□□□ 0.16
RNFT1Q5M7Z0 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
RNFT1Q5M7Z0 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
RNFT1Q5M7Z0 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
RNFT1Q5M7Z0 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
RNFT1Q5M7Z0 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
RNFT1Q5M7Z0 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
RNFT1Q5M7Z0 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC16.06■□□□□ 0.16
RNFT1Q5M7Z0 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
RNFT1Q5M7Z0 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC16.06■□□□□ 0.16
RNFT1Q5M7Z0 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
RNFT1Q5M7Z0 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
RNFT1Q5M7Z0 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC16.06■□□□□ 0.16
RNFT1Q5M7Z0 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC16.06■□□□□ 0.16
RNFT1Q5M7Z0 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
RNFT1Q5M7Z0 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
RNFT1Q5M7Z0 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
RNFT1Q5M7Z0 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
RNFT1Q5M7Z0 AC079776.2-201ENST00000641154 1609 ntBASIC16.05■□□□□ 0.16
RNFT1Q5M7Z0 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
RNFT1Q5M7Z0 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC16.05■□□□□ 0.16
RNFT1Q5M7Z0 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
RNFT1Q5M7Z0 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC16.05■□□□□ 0.16
RNFT1Q5M7Z0 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
RNFT1Q5M7Z0 AC022898.2-201ENST00000616822 1312 ntBASIC16.05■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 48.3 ms