Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC144BQ3MJ40 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC144BQ3MJ40 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC20.79■□□□□ 0.92
CCDC144BQ3MJ40 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC144BQ3MJ40 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC144BQ3MJ40 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC144BQ3MJ40 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
CCDC144BQ3MJ40 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
CCDC144BQ3MJ40 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC144BQ3MJ40 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC20.78■□□□□ 0.92
CCDC144BQ3MJ40 NSUN5P1-202ENST00000421140 1535 ntBASIC20.78■□□□□ 0.92
CCDC144BQ3MJ40 NSUN5P2-203ENST00000457352 1529 ntBASIC20.78■□□□□ 0.92
CCDC144BQ3MJ40 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC144BQ3MJ40 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC20.78■□□□□ 0.92
CCDC144BQ3MJ40 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC144BQ3MJ40 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC144BQ3MJ40 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC20.78■□□□□ 0.92
CCDC144BQ3MJ40 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC144BQ3MJ40 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
CCDC144BQ3MJ40 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC144BQ3MJ40 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC144BQ3MJ40 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC144BQ3MJ40 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
CCDC144BQ3MJ40 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC144BQ3MJ40 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
CCDC144BQ3MJ40 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC144BQ3MJ40 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC144BQ3MJ40 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC20.78■□□□□ 0.92
CCDC144BQ3MJ40 AC091607.1-201ENST00000490318 1060 ntBASIC20.78■□□□□ 0.92
CCDC144BQ3MJ40 AC009065.1-201ENST00000564055 1225 ntBASIC20.78■□□□□ 0.92
CCDC144BQ3MJ40 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC20.78■□□□□ 0.92
CCDC144BQ3MJ40 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC20.78■□□□□ 0.92
CCDC144BQ3MJ40 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC144BQ3MJ40 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC144BQ3MJ40 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC144BQ3MJ40 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC144BQ3MJ40 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
CCDC144BQ3MJ40 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC144BQ3MJ40 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
CCDC144BQ3MJ40 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC20.78■□□□□ 0.92
CCDC144BQ3MJ40 AL357033.4-201ENST00000617703 1807 ntBASIC20.78■□□□□ 0.92
CCDC144BQ3MJ40 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC144BQ3MJ40 AC135776.1-201ENST00000319817 2481 ntBASIC20.78■□□□□ 0.92
CCDC144BQ3MJ40 KRT8P50-201ENST00000562022 1438 ntBASIC20.78■□□□□ 0.92
CCDC144BQ3MJ40 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
CCDC144BQ3MJ40 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC144BQ3MJ40 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC20.77■□□□□ 0.92
CCDC144BQ3MJ40 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC144BQ3MJ40 KRT89P-201ENST00000620027 1478 ntBASIC20.77■□□□□ 0.92
CCDC144BQ3MJ40 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
CCDC144BQ3MJ40 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC144BQ3MJ40 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC144BQ3MJ40 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC20.77■□□□□ 0.92
CCDC144BQ3MJ40 AKR1C7P-201ENST00000305623 895 ntBASIC20.77■□□□□ 0.92
CCDC144BQ3MJ40 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC144BQ3MJ40 AC079776.4-201ENST00000511039 504 ntBASIC20.77■□□□□ 0.92
CCDC144BQ3MJ40 AL662844.1-201ENST00000546340 181 ntBASIC20.77■□□□□ 0.92
CCDC144BQ3MJ40 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC144BQ3MJ40 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
CCDC144BQ3MJ40 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC144BQ3MJ40 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC144BQ3MJ40 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC20.77■□□□□ 0.92
CCDC144BQ3MJ40 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC144BQ3MJ40 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC20.76■□□□□ 0.91
CCDC144BQ3MJ40 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC20.76■□□□□ 0.91
CCDC144BQ3MJ40 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC20.76■□□□□ 0.91
CCDC144BQ3MJ40 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC144BQ3MJ40 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC144BQ3MJ40 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC144BQ3MJ40 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
CCDC144BQ3MJ40 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC144BQ3MJ40 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC20.76■□□□□ 0.91
CCDC144BQ3MJ40 VENTXP7-201ENST00000475503 772 ntBASIC20.76■□□□□ 0.91
CCDC144BQ3MJ40 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC20.76■□□□□ 0.91
CCDC144BQ3MJ40 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC144BQ3MJ40 ABR-217ENST00000572441 563 ntTSL 4 BASIC20.76■□□□□ 0.91
CCDC144BQ3MJ40 CCNC-219ENST00000627680 896 ntTSL 5 BASIC20.76■□□□□ 0.91
CCDC144BQ3MJ40 VPS51-217ENST00000639871 243 ntTSL 5 BASIC20.76■□□□□ 0.91
CCDC144BQ3MJ40 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC144BQ3MJ40 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC144BQ3MJ40 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC20.76■□□□□ 0.91
CCDC144BQ3MJ40 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC144BQ3MJ40 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC20.76■□□□□ 0.91
CCDC144BQ3MJ40 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC144BQ3MJ40 AC106820.2-201ENST00000563775 3264 ntBASIC20.76■□□□□ 0.91
CCDC144BQ3MJ40 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC144BQ3MJ40 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
CCDC144BQ3MJ40 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC144BQ3MJ40 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC144BQ3MJ40 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
CCDC144BQ3MJ40 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC144BQ3MJ40 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC144BQ3MJ40 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC20.75■□□□□ 0.91
CCDC144BQ3MJ40 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC144BQ3MJ40 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC144BQ3MJ40 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
CCDC144BQ3MJ40 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC144BQ3MJ40 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC144BQ3MJ40 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC144BQ3MJ40 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms