Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC29.76■■■□□ 2.36
CUX1P39880 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC29.76■■■□□ 2.35
CUX1P39880 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC29.76■■■□□ 2.35
CUX1P39880 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC29.76■■■□□ 2.35
CUX1P39880 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC29.76■■■□□ 2.35
CUX1P39880 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC29.76■■■□□ 2.35
CUX1P39880 PTCHD3P3-201ENST00000403073 906 ntBASIC29.76■■■□□ 2.35
CUX1P39880 WDR53-203ENST00000429115 683 ntTSL 2 BASIC29.76■■■□□ 2.35
CUX1P39880 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC29.75■■■□□ 2.35
CUX1P39880 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC29.75■■■□□ 2.35
CUX1P39880 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC29.75■■■□□ 2.35
CUX1P39880 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC29.75■■■□□ 2.35
CUX1P39880 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC29.75■■■□□ 2.35
CUX1P39880 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC29.75■■■□□ 2.35
CUX1P39880 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC29.75■■■□□ 2.35
CUX1P39880 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC29.75■■■□□ 2.35
CUX1P39880 SIGLEC30P-201ENST00000455569 941 ntBASIC29.75■■■□□ 2.35
CUX1P39880 LHX6-205ENST00000464484 666 ntTSL 2 BASIC29.75■■■□□ 2.35
CUX1P39880 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC29.75■■■□□ 2.35
CUX1P39880 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC29.75■■■□□ 2.35
CUX1P39880 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC29.75■■■□□ 2.35
CUX1P39880 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC29.75■■■□□ 2.35
CUX1P39880 AC011467.4-201ENST00000594891 528 ntBASIC29.75■■■□□ 2.35
CUX1P39880 AC009336.1-201ENST00000608941 1553 ntBASIC29.75■■■□□ 2.35
CUX1P39880 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC29.75■■■□□ 2.35
CUX1P39880 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC29.74■■■□□ 2.35
CUX1P39880 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC29.74■■■□□ 2.35
CUX1P39880 AC100803.2-201ENST00000562459 1963 ntBASIC29.74■■■□□ 2.35
CUX1P39880 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC29.74■■■□□ 2.35
CUX1P39880 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC29.74■■■□□ 2.35
CUX1P39880 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC29.74■■■□□ 2.35
CUX1P39880 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC29.74■■■□□ 2.35
CUX1P39880 AC109462.3-201ENST00000573934 613 ntBASIC29.74■■■□□ 2.35
CUX1P39880 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC29.74■■■□□ 2.35
CUX1P39880 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC29.74■■■□□ 2.35
CUX1P39880 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC29.73■■■□□ 2.35
CUX1P39880 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC29.73■■■□□ 2.35
CUX1P39880 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC29.73■■■□□ 2.35
CUX1P39880 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC29.73■■■□□ 2.35
CUX1P39880 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC29.73■■■□□ 2.35
CUX1P39880 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC29.73■■■□□ 2.35
CUX1P39880 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC29.73■■■□□ 2.35
CUX1P39880 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC29.73■■■□□ 2.35
CUX1P39880 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC29.73■■■□□ 2.35
CUX1P39880 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC29.73■■■□□ 2.35
CUX1P39880 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC29.73■■■□□ 2.35
CUX1P39880 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC29.73■■■□□ 2.35
CUX1P39880 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC29.72■■■□□ 2.35
CUX1P39880 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC29.72■■■□□ 2.35
CUX1P39880 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC29.72■■■□□ 2.35
CUX1P39880 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC29.72■■■□□ 2.35
CUX1P39880 SYS1-203ENST00000414310 795 ntTSL 3 BASIC29.72■■■□□ 2.35
CUX1P39880 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC29.72■■■□□ 2.35
CUX1P39880 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC29.72■■■□□ 2.35
CUX1P39880 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC29.72■■■□□ 2.35
CUX1P39880 HARS-201ENST00000307633 1780 ntTSL 2 BASIC29.72■■■□□ 2.35
CUX1P39880 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC29.72■■■□□ 2.35
CUX1P39880 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC29.72■■■□□ 2.35
CUX1P39880 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC29.72■■■□□ 2.35
CUX1P39880 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC29.72■■■□□ 2.35
CUX1P39880 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC29.72■■■□□ 2.35
CUX1P39880 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC29.72■■■□□ 2.35
CUX1P39880 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC29.72■■■□□ 2.35
CUX1P39880 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC29.72■■■□□ 2.35
CUX1P39880 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC29.71■■■□□ 2.35
CUX1P39880 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC29.71■■■□□ 2.35
CUX1P39880 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC29.71■■■□□ 2.35
CUX1P39880 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.35
CUX1P39880 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.35
CUX1P39880 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.35
CUX1P39880 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC29.71■■■□□ 2.35
CUX1P39880 AC073130.3-201ENST00000624389 2278 ntBASIC29.71■■■□□ 2.35
CUX1P39880 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.35
CUX1P39880 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.35
CUX1P39880 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC29.71■■■□□ 2.35
CUX1P39880 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.35
CUX1P39880 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC29.71■■■□□ 2.35
CUX1P39880 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC29.71■■■□□ 2.35
CUX1P39880 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.35
CUX1P39880 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC29.71■■■□□ 2.35
CUX1P39880 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.35
CUX1P39880 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC29.71■■■□□ 2.35
CUX1P39880 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC29.71■■■□□ 2.35
CUX1P39880 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.35
CUX1P39880 AC004461.1-201ENST00000412461 403 ntBASIC29.71■■■□□ 2.35
CUX1P39880 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC29.71■■■□□ 2.35
CUX1P39880 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC29.71■■■□□ 2.35
CUX1P39880 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC29.71■■■□□ 2.35
CUX1P39880 AC068137.2-201ENST00000605408 478 ntBASIC29.71■■■□□ 2.35
CUX1P39880 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC29.71■■■□□ 2.35
CUX1P39880 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC29.71■■■□□ 2.35
CUX1P39880 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC29.7■■■□□ 2.35
CUX1P39880 PC-208ENST00000529047 1607 ntTSL 3 BASIC29.7■■■□□ 2.35
CUX1P39880 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC29.7■■■□□ 2.34
CUX1P39880 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC29.7■■■□□ 2.34
CUX1P39880 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC29.7■■■□□ 2.34
CUX1P39880 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC29.7■■■□□ 2.34
CUX1P39880 SMN2-210ENST00000511812 867 ntTSL 2 BASIC29.7■■■□□ 2.34
CUX1P39880 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC29.7■■■□□ 2.34
CUX1P39880 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC29.7■■■□□ 2.34
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms