Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
MSX1P28360 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC16.41■□□□□ 0.22
MSX1P28360 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC16.41■□□□□ 0.22
MSX1P28360 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
MSX1P28360 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC16.41■□□□□ 0.22
MSX1P28360 SLC25A6P5-201ENST00000435663 894 ntBASIC16.41■□□□□ 0.22
MSX1P28360 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC16.41■□□□□ 0.22
MSX1P28360 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
MSX1P28360 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
MSX1P28360 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC16.41■□□□□ 0.22
MSX1P28360 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
MSX1P28360 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
MSX1P28360 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC16.41■□□□□ 0.22
MSX1P28360 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
MSX1P28360 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
MSX1P28360 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC16.41■□□□□ 0.22
MSX1P28360 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
MSX1P28360 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC16.41■□□□□ 0.22
MSX1P28360 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC16.41■□□□□ 0.22
MSX1P28360 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC16.41■□□□□ 0.22
MSX1P28360 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
MSX1P28360 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC16.41■□□□□ 0.22
MSX1P28360 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
MSX1P28360 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
MSX1P28360 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
MSX1P28360 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
MSX1P28360 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC16.4■□□□□ 0.22
MSX1P28360 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
MSX1P28360 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
MSX1P28360 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
MSX1P28360 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
MSX1P28360 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC16.4■□□□□ 0.22
MSX1P28360 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
MSX1P28360 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
MSX1P28360 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
MSX1P28360 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
MSX1P28360 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
MSX1P28360 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC16.4■□□□□ 0.22
MSX1P28360 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
MSX1P28360 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
MSX1P28360 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
MSX1P28360 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
MSX1P28360 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
MSX1P28360 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
MSX1P28360 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
MSX1P28360 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
MSX1P28360 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC16.4■□□□□ 0.22
MSX1P28360 DRAXINP1-201ENST00000437611 948 ntBASIC16.4■□□□□ 0.22
MSX1P28360 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
MSX1P28360 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC16.4■□□□□ 0.22
MSX1P28360 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC16.4■□□□□ 0.22
MSX1P28360 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
MSX1P28360 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC16.4■□□□□ 0.22
MSX1P28360 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
MSX1P28360 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC16.4■□□□□ 0.22
MSX1P28360 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC16.4■□□□□ 0.22
MSX1P28360 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC16.4■□□□□ 0.22
MSX1P28360 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC16.4■□□□□ 0.22
MSX1P28360 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
MSX1P28360 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
MSX1P28360 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC16.4■□□□□ 0.22
MSX1P28360 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
MSX1P28360 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC16.4■□□□□ 0.22
MSX1P28360 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC16.4■□□□□ 0.22
MSX1P28360 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
MSX1P28360 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
MSX1P28360 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC16.39■□□□□ 0.22
MSX1P28360 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
MSX1P28360 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
MSX1P28360 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
MSX1P28360 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
MSX1P28360 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC16.39■□□□□ 0.21
MSX1P28360 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
MSX1P28360 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
MSX1P28360 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
MSX1P28360 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC16.39■□□□□ 0.21
MSX1P28360 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
MSX1P28360 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC16.39■□□□□ 0.21
MSX1P28360 TSPY19P-201ENST00000418461 509 ntBASIC16.39■□□□□ 0.21
MSX1P28360 TSPY18P-201ENST00000441642 509 ntBASIC16.39■□□□□ 0.21
MSX1P28360 AC068472.1-201ENST00000474589 881 ntBASIC16.39■□□□□ 0.21
MSX1P28360 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
MSX1P28360 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
MSX1P28360 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
MSX1P28360 TPSP2-201ENST00000561760 610 ntBASIC16.39■□□□□ 0.21
MSX1P28360 MPI-205ENST00000562606 1052 ntTSL 3 BASIC16.39■□□□□ 0.21
MSX1P28360 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC16.39■□□□□ 0.21
MSX1P28360 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC16.39■□□□□ 0.21
MSX1P28360 IGHV3-41-201ENST00000613121 348 ntBASIC16.39■□□□□ 0.21
MSX1P28360 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
MSX1P28360 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC16.39■□□□□ 0.21
MSX1P28360 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
MSX1P28360 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
MSX1P28360 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
MSX1P28360 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
MSX1P28360 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC16.39■□□□□ 0.21
MSX1P28360 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
MSX1P28360 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
MSX1P28360 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC16.39■□□□□ 0.21
MSX1P28360 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 85.3 ms