Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC18.34■□□□□ 0.53
COL9A1P20849 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
COL9A1P20849 HNRNPFP1-201ENST00000391730 1133 ntBASIC18.34■□□□□ 0.53
COL9A1P20849 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL9A1P20849 DDT-204ENST00000404092 805 ntTSL 3 BASIC18.34■□□□□ 0.53
COL9A1P20849 AC004461.1-201ENST00000412461 403 ntBASIC18.34■□□□□ 0.53
COL9A1P20849 GOLGA6L11P-201ENST00000417252 1298 ntBASIC18.34■□□□□ 0.53
COL9A1P20849 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC18.34■□□□□ 0.53
COL9A1P20849 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC18.34■□□□□ 0.53
COL9A1P20849 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC18.34■□□□□ 0.53
COL9A1P20849 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL9A1P20849 AC068472.1-201ENST00000474589 881 ntBASIC18.34■□□□□ 0.53
COL9A1P20849 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC18.34■□□□□ 0.53
COL9A1P20849 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC18.34■□□□□ 0.53
COL9A1P20849 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
COL9A1P20849 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC18.34■□□□□ 0.53
COL9A1P20849 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC18.34■□□□□ 0.53
COL9A1P20849 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
COL9A1P20849 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
COL9A1P20849 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC18.34■□□□□ 0.53
COL9A1P20849 PTGES2-AS1-201ENST00000443493 2100 ntBASIC18.34■□□□□ 0.53
COL9A1P20849 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
COL9A1P20849 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.53
COL9A1P20849 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
COL9A1P20849 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
COL9A1P20849 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
COL9A1P20849 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
COL9A1P20849 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.53
COL9A1P20849 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
COL9A1P20849 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
COL9A1P20849 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
COL9A1P20849 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
COL9A1P20849 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC18.33■□□□□ 0.52
COL9A1P20849 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
COL9A1P20849 RN7SL692P-201ENST00000464677 288 ntBASIC18.33■□□□□ 0.52
COL9A1P20849 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
COL9A1P20849 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC18.33■□□□□ 0.52
COL9A1P20849 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC18.33■□□□□ 0.52
COL9A1P20849 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC18.33■□□□□ 0.52
COL9A1P20849 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
COL9A1P20849 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
COL9A1P20849 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC18.33■□□□□ 0.52
COL9A1P20849 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
COL9A1P20849 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
COL9A1P20849 FAH-201ENST00000261755 1471 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
COL9A1P20849 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
COL9A1P20849 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
COL9A1P20849 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL9A1P20849 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL9A1P20849 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC18.32■□□□□ 0.52
COL9A1P20849 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC18.32■□□□□ 0.52
COL9A1P20849 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL9A1P20849 NME6-203ENST00000415644 849 ntTSL 2 BASIC18.32■□□□□ 0.52
COL9A1P20849 U91328.1-201ENST00000437528 223 ntBASIC18.32■□□□□ 0.52
COL9A1P20849 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC18.32■□□□□ 0.52
COL9A1P20849 AC023141.5-201ENST00000458585 616 ntBASIC18.32■□□□□ 0.52
COL9A1P20849 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC18.32■□□□□ 0.52
COL9A1P20849 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC18.32■□□□□ 0.52
COL9A1P20849 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC18.32■□□□□ 0.52
COL9A1P20849 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC18.32■□□□□ 0.52
COL9A1P20849 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC18.32■□□□□ 0.52
COL9A1P20849 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC18.32■□□□□ 0.52
COL9A1P20849 AC015911.4-201ENST00000588022 1070 ntBASIC18.32■□□□□ 0.52
COL9A1P20849 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
COL9A1P20849 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
COL9A1P20849 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC18.32■□□□□ 0.52
COL9A1P20849 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
COL9A1P20849 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
COL9A1P20849 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC18.32■□□□□ 0.52
COL9A1P20849 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL9A1P20849 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
COL9A1P20849 CYP51A1P2-201ENST00000419457 1499 ntBASIC18.32■□□□□ 0.52
COL9A1P20849 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC18.32■□□□□ 0.52
COL9A1P20849 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
COL9A1P20849 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL9A1P20849 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
COL9A1P20849 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
COL9A1P20849 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL9A1P20849 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL9A1P20849 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL9A1P20849 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC18.31■□□□□ 0.52
COL9A1P20849 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
COL9A1P20849 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
COL9A1P20849 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL9A1P20849 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
COL9A1P20849 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC18.31■□□□□ 0.52
COL9A1P20849 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
COL9A1P20849 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC18.31■□□□□ 0.52
COL9A1P20849 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC18.31■□□□□ 0.52
COL9A1P20849 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL9A1P20849 HFE2-206ENST00000634927 506 ntTSL 4 BASIC18.31■□□□□ 0.52
COL9A1P20849 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
COL9A1P20849 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
COL9A1P20849 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL9A1P20849 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
COL9A1P20849 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL9A1P20849 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
COL9A1P20849 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC18.31■□□□□ 0.52
COL9A1P20849 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL9A1P20849 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC18.31■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms