Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
HLA-DOAP06340 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
HLA-DOAP06340 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC21.05■□□□□ 0.96
HLA-DOAP06340 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
HLA-DOAP06340 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC21.05■□□□□ 0.96
HLA-DOAP06340 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC21.05■□□□□ 0.96
HLA-DOAP06340 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
HLA-DOAP06340 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
HLA-DOAP06340 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
HLA-DOAP06340 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
HLA-DOAP06340 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
HLA-DOAP06340 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
HLA-DOAP06340 PMS2P1-201ENST00000431037 1228 ntBASIC21.05■□□□□ 0.96
HLA-DOAP06340 AC103564.2-201ENST00000432853 1299 ntBASIC21.05■□□□□ 0.96
HLA-DOAP06340 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
HLA-DOAP06340 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC21.05■□□□□ 0.96
HLA-DOAP06340 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
HLA-DOAP06340 AC025062.2-201ENST00000605477 670 ntBASIC21.05■□□□□ 0.96
HLA-DOAP06340 AC093503.3-201ENST00000624917 2352 ntBASIC21.05■□□□□ 0.96
HLA-DOAP06340 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
HLA-DOAP06340 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
HLA-DOAP06340 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC21.05■□□□□ 0.96
HLA-DOAP06340 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC21.05■□□□□ 0.96
HLA-DOAP06340 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
HLA-DOAP06340 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
HLA-DOAP06340 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC21.04■□□□□ 0.96
HLA-DOAP06340 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
HLA-DOAP06340 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
HLA-DOAP06340 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
HLA-DOAP06340 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
HLA-DOAP06340 AC098818.2-201ENST00000564925 2320 ntBASIC21.04■□□□□ 0.96
HLA-DOAP06340 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC21.04■□□□□ 0.96
HLA-DOAP06340 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
HLA-DOAP06340 COX5BP2-201ENST00000392354 334 ntBASIC21.04■□□□□ 0.96
HLA-DOAP06340 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC21.04■□□□□ 0.96
HLA-DOAP06340 PON3-205ENST00000451904 1053 ntTSL 3 BASIC21.04■□□□□ 0.96
HLA-DOAP06340 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
HLA-DOAP06340 MSRA-206ENST00000521209 814 ntTSL 3 BASIC21.04■□□□□ 0.96
HLA-DOAP06340 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC21.04■□□□□ 0.96
HLA-DOAP06340 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC21.04■□□□□ 0.96
HLA-DOAP06340 AC116407.3-201ENST00000623905 1129 ntBASIC21.04■□□□□ 0.96
HLA-DOAP06340 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
HLA-DOAP06340 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
HLA-DOAP06340 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
HLA-DOAP06340 TNXA-203ENST00000507684 2038 ntBASIC21.04■□□□□ 0.96
HLA-DOAP06340 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC21.04■□□□□ 0.96
HLA-DOAP06340 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
HLA-DOAP06340 HLA-J-201ENST00000462773 1622 ntBASIC21.04■□□□□ 0.96
HLA-DOAP06340 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC21.04■□□□□ 0.96
HLA-DOAP06340 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
HLA-DOAP06340 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
HLA-DOAP06340 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC21.03■□□□□ 0.96
HLA-DOAP06340 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
HLA-DOAP06340 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC21.03■□□□□ 0.96
HLA-DOAP06340 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC21.03■□□□□ 0.96
HLA-DOAP06340 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
HLA-DOAP06340 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
HLA-DOAP06340 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
HLA-DOAP06340 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
HLA-DOAP06340 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
HLA-DOAP06340 PMPCAP1-201ENST00000508114 1576 ntBASIC21.03■□□□□ 0.96
HLA-DOAP06340 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
HLA-DOAP06340 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC21.03■□□□□ 0.96
HLA-DOAP06340 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
HLA-DOAP06340 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
HLA-DOAP06340 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
HLA-DOAP06340 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
HLA-DOAP06340 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC21.03■□□□□ 0.96
HLA-DOAP06340 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC21.03■□□□□ 0.96
HLA-DOAP06340 MTDHP4-201ENST00000600287 670 ntBASIC21.03■□□□□ 0.96
HLA-DOAP06340 AD001527.2-201ENST00000622994 785 ntBASIC21.03■□□□□ 0.96
HLA-DOAP06340 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
HLA-DOAP06340 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
HLA-DOAP06340 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
HLA-DOAP06340 AC079776.2-201ENST00000641154 1609 ntBASIC21.03■□□□□ 0.96
HLA-DOAP06340 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
HLA-DOAP06340 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
HLA-DOAP06340 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
HLA-DOAP06340 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
HLA-DOAP06340 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
HLA-DOAP06340 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
HLA-DOAP06340 POR-209ENST00000439269 1858 ntTSL 2 BASIC21.03■□□□□ 0.96
HLA-DOAP06340 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
HLA-DOAP06340 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC21.02■□□□□ 0.96
HLA-DOAP06340 AC135776.1-201ENST00000319817 2481 ntBASIC21.02■□□□□ 0.96
HLA-DOAP06340 MED29-202ENST00000594368 1471 ntTSL 2 BASIC21.02■□□□□ 0.96
HLA-DOAP06340 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
HLA-DOAP06340 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
HLA-DOAP06340 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
HLA-DOAP06340 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC21.02■□□□□ 0.96
HLA-DOAP06340 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
HLA-DOAP06340 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
HLA-DOAP06340 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
HLA-DOAP06340 MIR574-201ENST00000385209 96 ntBASIC21.02■□□□□ 0.96
HLA-DOAP06340 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
HLA-DOAP06340 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC21.02■□□□□ 0.96
HLA-DOAP06340 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
HLA-DOAP06340 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC21.02■□□□□ 0.96
HLA-DOAP06340 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC21.02■□□□□ 0.96
HLA-DOAP06340 AC106730.1-201ENST00000566722 1090 ntBASIC21.02■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms