Protein–RNA interactions for Protein: O95985

TOP3B, DNA topoisomerase 3-beta-1, humanhuman

Known RBP Predictions only

Length 862 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3BO95985 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TOP3BO95985 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC18.37■□□□□ 0.53
TOP3BO95985 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TOP3BO95985 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TOP3BO95985 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
TOP3BO95985 GAD2-202ENST00000376248 680 ntTSL 5 BASIC18.37■□□□□ 0.53
TOP3BO95985 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC18.37■□□□□ 0.53
TOP3BO95985 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TOP3BO95985 AP000867.3-201ENST00000524675 377 ntBASIC18.37■□□□□ 0.53
TOP3BO95985 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC18.37■□□□□ 0.53
TOP3BO95985 CALM3-211ENST00000598871 561 ntTSL 4 BASIC18.37■□□□□ 0.53
TOP3BO95985 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
TOP3BO95985 HLA-A-201ENST00000376802 1334 ntBASIC18.37■□□□□ 0.53
TOP3BO95985 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TOP3BO95985 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC18.37■□□□□ 0.53
TOP3BO95985 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
TOP3BO95985 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
TOP3BO95985 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TOP3BO95985 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TOP3BO95985 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TOP3BO95985 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC18.37■□□□□ 0.53
TOP3BO95985 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
TOP3BO95985 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
TOP3BO95985 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TOP3BO95985 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TOP3BO95985 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC18.37■□□□□ 0.53
TOP3BO95985 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC18.37■□□□□ 0.53
TOP3BO95985 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC18.37■□□□□ 0.53
TOP3BO95985 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TOP3BO95985 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
TOP3BO95985 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
TOP3BO95985 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TOP3BO95985 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TOP3BO95985 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
TOP3BO95985 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
TOP3BO95985 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC18.36■□□□□ 0.53
TOP3BO95985 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC18.36■□□□□ 0.53
TOP3BO95985 HCG11-201ENST00000411553 5696 ntBASIC18.36■□□□□ 0.53
TOP3BO95985 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TOP3BO95985 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC18.36■□□□□ 0.53
TOP3BO95985 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
TOP3BO95985 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
TOP3BO95985 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
TOP3BO95985 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
TOP3BO95985 AL590627.1-203ENST00000421194 1026 ntBASIC18.36■□□□□ 0.53
TOP3BO95985 TSPY12P-201ENST00000421279 868 ntBASIC18.36■□□□□ 0.53
TOP3BO95985 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TOP3BO95985 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
TOP3BO95985 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TOP3BO95985 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
TOP3BO95985 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC18.36■□□□□ 0.53
TOP3BO95985 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
TOP3BO95985 MIR4674-201ENST00000582457 87 ntBASIC18.36■□□□□ 0.53
TOP3BO95985 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC18.36■□□□□ 0.53
TOP3BO95985 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
TOP3BO95985 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
TOP3BO95985 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC18.36■□□□□ 0.53
TOP3BO95985 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TOP3BO95985 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
TOP3BO95985 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
TOP3BO95985 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TOP3BO95985 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC18.35■□□□□ 0.53
TOP3BO95985 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC18.35■□□□□ 0.53
TOP3BO95985 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC18.35■□□□□ 0.53
TOP3BO95985 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC18.35■□□□□ 0.53
TOP3BO95985 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC18.35■□□□□ 0.53
TOP3BO95985 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC18.35■□□□□ 0.53
TOP3BO95985 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TOP3BO95985 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC18.35■□□□□ 0.53
TOP3BO95985 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TOP3BO95985 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TOP3BO95985 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TOP3BO95985 ENSA-205ENST00000361532 792 ntTSL 2 BASIC18.35■□□□□ 0.53
TOP3BO95985 MIR574-201ENST00000385209 96 ntBASIC18.35■□□□□ 0.53
TOP3BO95985 KRT18P31-201ENST00000506277 1292 ntBASIC18.35■□□□□ 0.53
TOP3BO95985 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC18.35■□□□□ 0.53
TOP3BO95985 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
TOP3BO95985 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC18.35■□□□□ 0.53
TOP3BO95985 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC18.35■□□□□ 0.53
TOP3BO95985 AL121772.3-201ENST00000610840 674 ntBASIC18.35■□□□□ 0.53
TOP3BO95985 BX640515.1-201ENST00000617215 977 ntBASIC18.35■□□□□ 0.53
TOP3BO95985 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
TOP3BO95985 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TOP3BO95985 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC18.35■□□□□ 0.53
TOP3BO95985 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC18.35■□□□□ 0.53
TOP3BO95985 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TOP3BO95985 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC18.35■□□□□ 0.53
TOP3BO95985 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC18.35■□□□□ 0.53
TOP3BO95985 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC18.35■□□□□ 0.53
TOP3BO95985 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TOP3BO95985 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TOP3BO95985 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
TOP3BO95985 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC18.35■□□□□ 0.53
TOP3BO95985 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TOP3BO95985 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
TOP3BO95985 AL109659.2-201ENST00000606809 1674 ntBASIC18.34■□□□□ 0.53
TOP3BO95985 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
TOP3BO95985 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC18.34■□□□□ 0.53
TOP3BO95985 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
TOP3BO95985 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms