Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC19.57■□□□□ 0.72
CLDN3O15551 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
CLDN3O15551 MINOS1P3-201ENST00000457048 203 ntBASIC19.57■□□□□ 0.72
CLDN3O15551 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC19.57■□□□□ 0.72
CLDN3O15551 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC19.57■□□□□ 0.72
CLDN3O15551 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC19.57■□□□□ 0.72
CLDN3O15551 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC19.57■□□□□ 0.72
CLDN3O15551 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC19.57■□□□□ 0.72
CLDN3O15551 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC19.57■□□□□ 0.72
CLDN3O15551 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC19.57■□□□□ 0.72
CLDN3O15551 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC19.57■□□□□ 0.72
CLDN3O15551 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CLDN3O15551 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
CLDN3O15551 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC19.57■□□□□ 0.72
CLDN3O15551 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CLDN3O15551 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CLDN3O15551 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CLDN3O15551 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CLDN3O15551 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CLDN3O15551 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
CLDN3O15551 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
CLDN3O15551 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CLDN3O15551 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CLDN3O15551 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
CLDN3O15551 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC19.56■□□□□ 0.72
CLDN3O15551 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CLDN3O15551 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CLDN3O15551 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
CLDN3O15551 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC19.56■□□□□ 0.72
CLDN3O15551 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC19.56■□□□□ 0.72
CLDN3O15551 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC19.56■□□□□ 0.72
CLDN3O15551 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
CLDN3O15551 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CLDN3O15551 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC19.56■□□□□ 0.72
CLDN3O15551 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CLDN3O15551 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CLDN3O15551 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
CLDN3O15551 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC19.56■□□□□ 0.72
CLDN3O15551 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CLDN3O15551 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC19.56■□□□□ 0.72
CLDN3O15551 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC19.56■□□□□ 0.72
CLDN3O15551 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC19.56■□□□□ 0.72
CLDN3O15551 AC005336.2-201ENST00000593183 939 ntBASIC19.56■□□□□ 0.72
CLDN3O15551 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
CLDN3O15551 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
CLDN3O15551 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CLDN3O15551 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CLDN3O15551 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
CLDN3O15551 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC19.56■□□□□ 0.72
CLDN3O15551 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
CLDN3O15551 STK4-201ENST00000372801 2038 ntTSL 2 BASIC19.56■□□□□ 0.72
CLDN3O15551 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CLDN3O15551 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CLDN3O15551 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CLDN3O15551 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CLDN3O15551 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CLDN3O15551 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC19.55■□□□□ 0.72
CLDN3O15551 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
CLDN3O15551 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
CLDN3O15551 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CLDN3O15551 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
CLDN3O15551 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC19.55■□□□□ 0.72
CLDN3O15551 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CLDN3O15551 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CLDN3O15551 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
CLDN3O15551 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CLDN3O15551 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
CLDN3O15551 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CLDN3O15551 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC19.55■□□□□ 0.72
CLDN3O15551 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CLDN3O15551 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC19.55■□□□□ 0.72
CLDN3O15551 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CLDN3O15551 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CLDN3O15551 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CLDN3O15551 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC19.55■□□□□ 0.72
CLDN3O15551 CDV3-207ENST00000508481 661 ntTSL 3 BASIC19.55■□□□□ 0.72
CLDN3O15551 SKP2-204ENST00000508514 821 ntTSL 3 BASIC19.55■□□□□ 0.72
CLDN3O15551 TOLLIP-AS1-201ENST00000530897 939 ntBASIC19.55■□□□□ 0.72
CLDN3O15551 CBFB-203ENST00000561924 584 ntTSL 5 BASIC19.55■□□□□ 0.72
CLDN3O15551 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC19.55■□□□□ 0.72
CLDN3O15551 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC19.55■□□□□ 0.72
CLDN3O15551 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CLDN3O15551 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC19.55■□□□□ 0.72
CLDN3O15551 AC099336.1-202ENST00000602961 463 ntBASIC19.55■□□□□ 0.72
CLDN3O15551 AC012313.10-201ENST00000623509 926 ntBASIC19.55■□□□□ 0.72
CLDN3O15551 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CLDN3O15551 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
CLDN3O15551 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC19.55■□□□□ 0.72
CLDN3O15551 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC19.55■□□□□ 0.72
CLDN3O15551 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC19.55■□□□□ 0.72
CLDN3O15551 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
CLDN3O15551 FLJ13224-201ENST00000313737 1514 ntBASIC19.55■□□□□ 0.72
CLDN3O15551 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC19.55■□□□□ 0.72
CLDN3O15551 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CLDN3O15551 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
CLDN3O15551 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC19.55■□□□□ 0.72
CLDN3O15551 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CLDN3O15551 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CLDN3O15551 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
CLDN3O15551 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC19.54■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms