Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC22.52■■□□□ 1.2
NPHP1O15259 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC22.52■■□□□ 1.2
NPHP1O15259 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC22.52■■□□□ 1.2
NPHP1O15259 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC22.52■■□□□ 1.2
NPHP1O15259 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
NPHP1O15259 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
NPHP1O15259 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
NPHP1O15259 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC22.52■■□□□ 1.2
NPHP1O15259 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC22.52■■□□□ 1.2
NPHP1O15259 CENPM-204ENST00000402420 688 ntTSL 5 BASIC22.52■■□□□ 1.2
NPHP1O15259 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC22.52■■□□□ 1.2
NPHP1O15259 GPX1P2-201ENST00000429271 606 ntBASIC22.52■■□□□ 1.2
NPHP1O15259 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC22.52■■□□□ 1.2
NPHP1O15259 DHDH-204ENST00000523250 634 ntTSL 5 BASIC22.52■■□□□ 1.2
NPHP1O15259 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC22.52■■□□□ 1.2
NPHP1O15259 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
NPHP1O15259 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC22.52■■□□□ 1.2
NPHP1O15259 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
NPHP1O15259 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC22.52■■□□□ 1.2
NPHP1O15259 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
NPHP1O15259 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
NPHP1O15259 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
NPHP1O15259 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC22.52■■□□□ 1.19
NPHP1O15259 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
NPHP1O15259 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC22.51■■□□□ 1.19
NPHP1O15259 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC22.51■■□□□ 1.19
NPHP1O15259 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC22.51■■□□□ 1.19
NPHP1O15259 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
NPHP1O15259 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
NPHP1O15259 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC22.51■■□□□ 1.19
NPHP1O15259 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC22.51■■□□□ 1.19
NPHP1O15259 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC22.51■■□□□ 1.19
NPHP1O15259 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
NPHP1O15259 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC22.51■■□□□ 1.19
NPHP1O15259 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC22.51■■□□□ 1.19
NPHP1O15259 RNF151-202ENST00000569210 853 ntTSL 2 BASIC22.51■■□□□ 1.19
NPHP1O15259 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC22.51■■□□□ 1.19
NPHP1O15259 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC22.51■■□□□ 1.19
NPHP1O15259 AC107918.4-202ENST00000641623 219 ntBASIC22.51■■□□□ 1.19
NPHP1O15259 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC22.51■■□□□ 1.19
NPHP1O15259 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC22.51■■□□□ 1.19
NPHP1O15259 AP002414.3-201ENST00000589352 1468 ntBASIC22.51■■□□□ 1.19
NPHP1O15259 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC22.51■■□□□ 1.19
NPHP1O15259 AC005082.1-201ENST00000413042 2259 ntBASIC22.51■■□□□ 1.19
NPHP1O15259 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
NPHP1O15259 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
NPHP1O15259 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC22.51■■□□□ 1.19
NPHP1O15259 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
NPHP1O15259 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
NPHP1O15259 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
NPHP1O15259 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC22.5■■□□□ 1.19
NPHP1O15259 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC22.5■■□□□ 1.19
NPHP1O15259 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC22.5■■□□□ 1.19
NPHP1O15259 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
NPHP1O15259 YBX2P1-201ENST00000394192 760 ntBASIC22.5■■□□□ 1.19
NPHP1O15259 RPSAP43-201ENST00000402237 625 ntBASIC22.5■■□□□ 1.19
NPHP1O15259 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC22.5■■□□□ 1.19
NPHP1O15259 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC22.5■■□□□ 1.19
NPHP1O15259 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC22.5■■□□□ 1.19
NPHP1O15259 UNC93B6-202ENST00000528242 690 ntBASIC22.5■■□□□ 1.19
NPHP1O15259 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
NPHP1O15259 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
NPHP1O15259 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC22.5■■□□□ 1.19
NPHP1O15259 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC22.5■■□□□ 1.19
NPHP1O15259 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC22.5■■□□□ 1.19
NPHP1O15259 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC22.5■■□□□ 1.19
NPHP1O15259 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC22.5■■□□□ 1.19
NPHP1O15259 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
NPHP1O15259 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
NPHP1O15259 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC22.49■■□□□ 1.19
NPHP1O15259 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC22.49■■□□□ 1.19
NPHP1O15259 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
NPHP1O15259 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC22.49■■□□□ 1.19
NPHP1O15259 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
NPHP1O15259 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC22.49■■□□□ 1.19
NPHP1O15259 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC22.49■■□□□ 1.19
NPHP1O15259 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC22.49■■□□□ 1.19
NPHP1O15259 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
NPHP1O15259 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC22.49■■□□□ 1.19
NPHP1O15259 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC22.49■■□□□ 1.19
NPHP1O15259 TBC1D3P5-201ENST00000579401 1545 ntBASIC22.49■■□□□ 1.19
NPHP1O15259 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC22.49■■□□□ 1.19
NPHP1O15259 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
NPHP1O15259 BEX3-201ENST00000361298 921 ntTSL 2 BASIC22.49■■□□□ 1.19
NPHP1O15259 CTNS-203ENST00000399306 803 ntTSL 3 BASIC22.49■■□□□ 1.19
NPHP1O15259 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
NPHP1O15259 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC22.49■■□□□ 1.19
NPHP1O15259 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC22.49■■□□□ 1.19
NPHP1O15259 RPS29-206ENST00000557111 488 ntTSL 2 BASIC22.49■■□□□ 1.19
NPHP1O15259 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC22.49■■□□□ 1.19
NPHP1O15259 MIR1199-201ENST00000621445 119 ntBASIC22.49■■□□□ 1.19
NPHP1O15259 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC22.49■■□□□ 1.19
NPHP1O15259 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC22.49■■□□□ 1.19
NPHP1O15259 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC22.49■■□□□ 1.19
NPHP1O15259 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC22.49■■□□□ 1.19
NPHP1O15259 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
NPHP1O15259 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC22.48■■□□□ 1.19
NPHP1O15259 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
NPHP1O15259 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
NPHP1O15259 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms