Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL4A3BPQ9Y5P4 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL4A3BPQ9Y5P4 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL4A3BPQ9Y5P4 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC20.06■□□□□ 0.8
COL4A3BPQ9Y5P4 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC20.06■□□□□ 0.8
COL4A3BPQ9Y5P4 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
COL4A3BPQ9Y5P4 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
COL4A3BPQ9Y5P4 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
COL4A3BPQ9Y5P4 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC20.06■□□□□ 0.8
COL4A3BPQ9Y5P4 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL4A3BPQ9Y5P4 SKP2-204ENST00000508514 821 ntTSL 3 BASIC20.06■□□□□ 0.8
COL4A3BPQ9Y5P4 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC20.06■□□□□ 0.8
COL4A3BPQ9Y5P4 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC20.06■□□□□ 0.8
COL4A3BPQ9Y5P4 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
COL4A3BPQ9Y5P4 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC20.06■□□□□ 0.8
COL4A3BPQ9Y5P4 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC20.06■□□□□ 0.8
COL4A3BPQ9Y5P4 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC20.06■□□□□ 0.8
COL4A3BPQ9Y5P4 AC132938.6-201ENST00000623828 1655 ntBASIC20.06■□□□□ 0.8
COL4A3BPQ9Y5P4 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL4A3BPQ9Y5P4 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
COL4A3BPQ9Y5P4 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
COL4A3BPQ9Y5P4 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
COL4A3BPQ9Y5P4 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
COL4A3BPQ9Y5P4 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL4A3BPQ9Y5P4 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
COL4A3BPQ9Y5P4 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC20.05■□□□□ 0.8
COL4A3BPQ9Y5P4 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL4A3BPQ9Y5P4 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL4A3BPQ9Y5P4 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
COL4A3BPQ9Y5P4 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC20.05■□□□□ 0.8
COL4A3BPQ9Y5P4 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
COL4A3BPQ9Y5P4 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
COL4A3BPQ9Y5P4 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL4A3BPQ9Y5P4 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL4A3BPQ9Y5P4 AC012615.1-201ENST00000565797 1299 ntBASIC20.05■□□□□ 0.8
COL4A3BPQ9Y5P4 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC20.05■□□□□ 0.8
COL4A3BPQ9Y5P4 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL4A3BPQ9Y5P4 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC20.05■□□□□ 0.8
COL4A3BPQ9Y5P4 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
COL4A3BPQ9Y5P4 AC233702.3-201ENST00000578656 1387 ntBASIC20.05■□□□□ 0.8
COL4A3BPQ9Y5P4 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC20.05■□□□□ 0.8
COL4A3BPQ9Y5P4 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL4A3BPQ9Y5P4 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL4A3BPQ9Y5P4 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL4A3BPQ9Y5P4 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
COL4A3BPQ9Y5P4 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL4A3BPQ9Y5P4 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL4A3BPQ9Y5P4 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC20.04■□□□□ 0.8
COL4A3BPQ9Y5P4 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
COL4A3BPQ9Y5P4 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL4A3BPQ9Y5P4 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL4A3BPQ9Y5P4 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL4A3BPQ9Y5P4 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC20.04■□□□□ 0.8
COL4A3BPQ9Y5P4 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL4A3BPQ9Y5P4 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL4A3BPQ9Y5P4 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL4A3BPQ9Y5P4 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC20.04■□□□□ 0.8
COL4A3BPQ9Y5P4 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC20.04■□□□□ 0.8
COL4A3BPQ9Y5P4 DUTP2-201ENST00000519164 463 ntBASIC20.04■□□□□ 0.8
COL4A3BPQ9Y5P4 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC20.04■□□□□ 0.8
COL4A3BPQ9Y5P4 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC20.04■□□□□ 0.8
COL4A3BPQ9Y5P4 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC20.04■□□□□ 0.8
COL4A3BPQ9Y5P4 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL4A3BPQ9Y5P4 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
COL4A3BPQ9Y5P4 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL4A3BPQ9Y5P4 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC20.04■□□□□ 0.8
COL4A3BPQ9Y5P4 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL4A3BPQ9Y5P4 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL4A3BPQ9Y5P4 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
COL4A3BPQ9Y5P4 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL4A3BPQ9Y5P4 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
COL4A3BPQ9Y5P4 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
COL4A3BPQ9Y5P4 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC20.03■□□□□ 0.8
COL4A3BPQ9Y5P4 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL4A3BPQ9Y5P4 STK4-201ENST00000372801 2038 ntTSL 2 BASIC20.03■□□□□ 0.8
COL4A3BPQ9Y5P4 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL4A3BPQ9Y5P4 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
COL4A3BPQ9Y5P4 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL4A3BPQ9Y5P4 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
COL4A3BPQ9Y5P4 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL4A3BPQ9Y5P4 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
COL4A3BPQ9Y5P4 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
COL4A3BPQ9Y5P4 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL4A3BPQ9Y5P4 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC20.03■□□□□ 0.8
COL4A3BPQ9Y5P4 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL4A3BPQ9Y5P4 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
COL4A3BPQ9Y5P4 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC20.03■□□□□ 0.8
COL4A3BPQ9Y5P4 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL4A3BPQ9Y5P4 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL4A3BPQ9Y5P4 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC20.03■□□□□ 0.8
COL4A3BPQ9Y5P4 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
COL4A3BPQ9Y5P4 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC20.03■□□□□ 0.8
COL4A3BPQ9Y5P4 NUS1P1-201ENST00000446295 882 ntBASIC20.03■□□□□ 0.8
COL4A3BPQ9Y5P4 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC20.03■□□□□ 0.8
COL4A3BPQ9Y5P4 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
COL4A3BPQ9Y5P4 SDHD-206ENST00000528182 754 ntTSL 3 BASIC20.03■□□□□ 0.8
COL4A3BPQ9Y5P4 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
COL4A3BPQ9Y5P4 PNN-202ENST00000553331 656 ntTSL 3 BASIC20.03■□□□□ 0.8
COL4A3BPQ9Y5P4 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC20.03■□□□□ 0.8
COL4A3BPQ9Y5P4 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 50.9 ms