Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
LIMA1Q9UHB6 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
LIMA1Q9UHB6 MMP23A-201ENST00000234610 1017 ntBASIC19.6■□□□□ 0.73
LIMA1Q9UHB6 HES2-202ENST00000377836 507 ntTSL 2 BASIC19.6■□□□□ 0.73
LIMA1Q9UHB6 ECEL1P3-201ENST00000427961 737 ntBASIC19.6■□□□□ 0.73
LIMA1Q9UHB6 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
LIMA1Q9UHB6 DDX43P3-201ENST00000441064 443 ntBASIC19.6■□□□□ 0.73
LIMA1Q9UHB6 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC19.6■□□□□ 0.73
LIMA1Q9UHB6 MIR4497-201ENST00000583208 89 ntBASIC19.6■□□□□ 0.73
LIMA1Q9UHB6 USF2-205ENST00000594064 1179 ntTSL 2 BASIC19.6■□□□□ 0.73
LIMA1Q9UHB6 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC19.6■□□□□ 0.73
LIMA1Q9UHB6 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC19.6■□□□□ 0.73
LIMA1Q9UHB6 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
LIMA1Q9UHB6 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
LIMA1Q9UHB6 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
LIMA1Q9UHB6 AC099398.1-201ENST00000567919 2776 ntBASIC19.6■□□□□ 0.73
LIMA1Q9UHB6 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC19.6■□□□□ 0.73
LIMA1Q9UHB6 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
LIMA1Q9UHB6 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
LIMA1Q9UHB6 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
LIMA1Q9UHB6 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
LIMA1Q9UHB6 KRT8P47-201ENST00000604727 1398 ntBASIC19.59■□□□□ 0.73
LIMA1Q9UHB6 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC19.59■□□□□ 0.73
LIMA1Q9UHB6 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
LIMA1Q9UHB6 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC19.59■□□□□ 0.73
LIMA1Q9UHB6 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
LIMA1Q9UHB6 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
LIMA1Q9UHB6 TPR-209ENST00000613151 2478 ntTSL 5 BASIC19.59■□□□□ 0.73
LIMA1Q9UHB6 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC19.59■□□□□ 0.73
LIMA1Q9UHB6 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC19.59■□□□□ 0.73
LIMA1Q9UHB6 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC19.59■□□□□ 0.73
LIMA1Q9UHB6 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
LIMA1Q9UHB6 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC19.59■□□□□ 0.73
LIMA1Q9UHB6 KRT18P65-201ENST00000439811 1286 ntBASIC19.59■□□□□ 0.73
LIMA1Q9UHB6 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC19.59■□□□□ 0.73
LIMA1Q9UHB6 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC19.59■□□□□ 0.73
LIMA1Q9UHB6 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
LIMA1Q9UHB6 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
LIMA1Q9UHB6 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC19.59■□□□□ 0.73
LIMA1Q9UHB6 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC19.59■□□□□ 0.73
LIMA1Q9UHB6 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC19.59■□□□□ 0.73
LIMA1Q9UHB6 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC19.59■□□□□ 0.73
LIMA1Q9UHB6 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
LIMA1Q9UHB6 AP006294.2-201ENST00000641667 209 ntBASIC19.59■□□□□ 0.73
LIMA1Q9UHB6 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
LIMA1Q9UHB6 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
LIMA1Q9UHB6 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
LIMA1Q9UHB6 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC19.59■□□□□ 0.73
LIMA1Q9UHB6 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
LIMA1Q9UHB6 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
LIMA1Q9UHB6 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.73
LIMA1Q9UHB6 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
LIMA1Q9UHB6 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
LIMA1Q9UHB6 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.73
LIMA1Q9UHB6 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.73
LIMA1Q9UHB6 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
LIMA1Q9UHB6 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
LIMA1Q9UHB6 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
LIMA1Q9UHB6 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
LIMA1Q9UHB6 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
LIMA1Q9UHB6 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
LIMA1Q9UHB6 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC19.58■□□□□ 0.72
LIMA1Q9UHB6 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC19.58■□□□□ 0.72
LIMA1Q9UHB6 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC19.58■□□□□ 0.72
LIMA1Q9UHB6 GPX4-207ENST00000589115 812 ntTSL 2 BASIC19.58■□□□□ 0.72
LIMA1Q9UHB6 TK1-205ENST00000590862 642 ntTSL 3 BASIC19.58■□□□□ 0.72
LIMA1Q9UHB6 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC19.58■□□□□ 0.72
LIMA1Q9UHB6 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
LIMA1Q9UHB6 KRT89P-201ENST00000620027 1478 ntBASIC19.58■□□□□ 0.72
LIMA1Q9UHB6 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC19.58■□□□□ 0.72
LIMA1Q9UHB6 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC19.58■□□□□ 0.72
LIMA1Q9UHB6 AL121761.2-201ENST00000598007 1648 ntBASIC19.58■□□□□ 0.72
LIMA1Q9UHB6 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC19.57■□□□□ 0.72
LIMA1Q9UHB6 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
LIMA1Q9UHB6 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
LIMA1Q9UHB6 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
LIMA1Q9UHB6 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
LIMA1Q9UHB6 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
LIMA1Q9UHB6 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
LIMA1Q9UHB6 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
LIMA1Q9UHB6 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
LIMA1Q9UHB6 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
LIMA1Q9UHB6 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
LIMA1Q9UHB6 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
LIMA1Q9UHB6 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC19.57■□□□□ 0.72
LIMA1Q9UHB6 AP000523.1-201ENST00000398242 1049 ntBASIC19.57■□□□□ 0.72
LIMA1Q9UHB6 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC19.57■□□□□ 0.72
LIMA1Q9UHB6 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC19.57■□□□□ 0.72
LIMA1Q9UHB6 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
LIMA1Q9UHB6 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC19.57■□□□□ 0.72
LIMA1Q9UHB6 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC19.57■□□□□ 0.72
LIMA1Q9UHB6 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
LIMA1Q9UHB6 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
LIMA1Q9UHB6 TMEM191A-211ENST00000637163 1067 ntBASIC19.57■□□□□ 0.72
LIMA1Q9UHB6 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC19.57■□□□□ 0.72
LIMA1Q9UHB6 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
LIMA1Q9UHB6 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC19.57■□□□□ 0.72
LIMA1Q9UHB6 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
LIMA1Q9UHB6 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
LIMA1Q9UHB6 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC19.57■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms