Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
LIMD1Q9UGP4 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LIMD1Q9UGP4 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC18.68■□□□□ 0.58
LIMD1Q9UGP4 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LIMD1Q9UGP4 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
LIMD1Q9UGP4 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
LIMD1Q9UGP4 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC18.67■□□□□ 0.58
LIMD1Q9UGP4 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
LIMD1Q9UGP4 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LIMD1Q9UGP4 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LIMD1Q9UGP4 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LIMD1Q9UGP4 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
LIMD1Q9UGP4 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
LIMD1Q9UGP4 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC18.67■□□□□ 0.58
LIMD1Q9UGP4 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC18.67■□□□□ 0.58
LIMD1Q9UGP4 MTDHP5-201ENST00000598980 586 ntBASIC18.67■□□□□ 0.58
LIMD1Q9UGP4 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC18.67■□□□□ 0.58
LIMD1Q9UGP4 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC18.67■□□□□ 0.58
LIMD1Q9UGP4 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LIMD1Q9UGP4 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LIMD1Q9UGP4 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
LIMD1Q9UGP4 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
LIMD1Q9UGP4 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
LIMD1Q9UGP4 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
LIMD1Q9UGP4 LINC00602-201ENST00000629776 2065 ntBASIC18.67■□□□□ 0.58
LIMD1Q9UGP4 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC18.67■□□□□ 0.58
LIMD1Q9UGP4 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC18.67■□□□□ 0.58
LIMD1Q9UGP4 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LIMD1Q9UGP4 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
LIMD1Q9UGP4 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC18.66■□□□□ 0.58
LIMD1Q9UGP4 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
LIMD1Q9UGP4 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
LIMD1Q9UGP4 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LIMD1Q9UGP4 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC18.66■□□□□ 0.58
LIMD1Q9UGP4 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC18.66■□□□□ 0.58
LIMD1Q9UGP4 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
LIMD1Q9UGP4 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
LIMD1Q9UGP4 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC18.66■□□□□ 0.58
LIMD1Q9UGP4 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC18.66■□□□□ 0.58
LIMD1Q9UGP4 SOD2-201ENST00000337404 991 ntTSL 2 BASIC18.66■□□□□ 0.58
LIMD1Q9UGP4 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC18.66■□□□□ 0.58
LIMD1Q9UGP4 BEX3-201ENST00000361298 921 ntTSL 2 BASIC18.66■□□□□ 0.58
LIMD1Q9UGP4 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LIMD1Q9UGP4 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
LIMD1Q9UGP4 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LIMD1Q9UGP4 AC211486.1-202ENST00000416371 468 ntBASIC18.66■□□□□ 0.58
LIMD1Q9UGP4 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC18.66■□□□□ 0.58
LIMD1Q9UGP4 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC18.66■□□□□ 0.58
LIMD1Q9UGP4 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC18.66■□□□□ 0.58
LIMD1Q9UGP4 AC211476.1-201ENST00000503899 468 ntBASIC18.66■□□□□ 0.58
LIMD1Q9UGP4 AL596442.2-201ENST00000610240 980 ntBASIC18.66■□□□□ 0.58
LIMD1Q9UGP4 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC18.66■□□□□ 0.58
LIMD1Q9UGP4 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
LIMD1Q9UGP4 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LIMD1Q9UGP4 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
LIMD1Q9UGP4 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LIMD1Q9UGP4 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC18.66■□□□□ 0.58
LIMD1Q9UGP4 KRT18P28-201ENST00000453838 1332 ntBASIC18.66■□□□□ 0.58
LIMD1Q9UGP4 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LIMD1Q9UGP4 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
LIMD1Q9UGP4 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LIMD1Q9UGP4 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC18.66■□□□□ 0.58
LIMD1Q9UGP4 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
LIMD1Q9UGP4 AC093503.3-201ENST00000624917 2352 ntBASIC18.66■□□□□ 0.58
LIMD1Q9UGP4 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LIMD1Q9UGP4 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LIMD1Q9UGP4 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LIMD1Q9UGP4 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
LIMD1Q9UGP4 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
LIMD1Q9UGP4 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC18.65■□□□□ 0.58
LIMD1Q9UGP4 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC18.65■□□□□ 0.58
LIMD1Q9UGP4 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
LIMD1Q9UGP4 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
LIMD1Q9UGP4 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC18.65■□□□□ 0.58
LIMD1Q9UGP4 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC18.65■□□□□ 0.58
LIMD1Q9UGP4 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
LIMD1Q9UGP4 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
LIMD1Q9UGP4 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC18.65■□□□□ 0.58
LIMD1Q9UGP4 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC18.65■□□□□ 0.58
LIMD1Q9UGP4 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC18.65■□□□□ 0.58
LIMD1Q9UGP4 MSRA-206ENST00000521209 814 ntTSL 3 BASIC18.65■□□□□ 0.58
LIMD1Q9UGP4 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC18.65■□□□□ 0.58
LIMD1Q9UGP4 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC18.65■□□□□ 0.58
LIMD1Q9UGP4 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC18.65■□□□□ 0.58
LIMD1Q9UGP4 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
LIMD1Q9UGP4 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC18.65■□□□□ 0.58
LIMD1Q9UGP4 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
LIMD1Q9UGP4 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC18.65■□□□□ 0.58
LIMD1Q9UGP4 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC18.65■□□□□ 0.58
LIMD1Q9UGP4 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
LIMD1Q9UGP4 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
LIMD1Q9UGP4 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC18.65■□□□□ 0.58
LIMD1Q9UGP4 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
LIMD1Q9UGP4 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC18.65■□□□□ 0.58
LIMD1Q9UGP4 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC18.65■□□□□ 0.58
LIMD1Q9UGP4 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
LIMD1Q9UGP4 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
LIMD1Q9UGP4 AL024508.2-201ENST00000607749 1894 ntBASIC18.65■□□□□ 0.58
LIMD1Q9UGP4 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
LIMD1Q9UGP4 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms