Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC15.92■□□□□ 0.14
CLCF1Q9UBD9 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC15.92■□□□□ 0.14
CLCF1Q9UBD9 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
CLCF1Q9UBD9 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC15.92■□□□□ 0.14
CLCF1Q9UBD9 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC15.92■□□□□ 0.14
CLCF1Q9UBD9 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC15.92■□□□□ 0.14
CLCF1Q9UBD9 SLC25A6P4-201ENST00000586535 553 ntBASIC15.92■□□□□ 0.14
CLCF1Q9UBD9 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC15.92■□□□□ 0.14
CLCF1Q9UBD9 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
CLCF1Q9UBD9 TP73-AS1-207ENST00000624167 988 ntBASIC15.92■□□□□ 0.14
CLCF1Q9UBD9 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
CLCF1Q9UBD9 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC15.92■□□□□ 0.14
CLCF1Q9UBD9 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
CLCF1Q9UBD9 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC15.92■□□□□ 0.14
CLCF1Q9UBD9 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC15.92■□□□□ 0.14
CLCF1Q9UBD9 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC15.92■□□□□ 0.14
CLCF1Q9UBD9 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC15.92■□□□□ 0.14
CLCF1Q9UBD9 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
CLCF1Q9UBD9 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC15.92■□□□□ 0.14
CLCF1Q9UBD9 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
CLCF1Q9UBD9 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC15.92■□□□□ 0.14
CLCF1Q9UBD9 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
CLCF1Q9UBD9 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC15.92■□□□□ 0.14
CLCF1Q9UBD9 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
CLCF1Q9UBD9 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
CLCF1Q9UBD9 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
CLCF1Q9UBD9 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
CLCF1Q9UBD9 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC15.92■□□□□ 0.14
CLCF1Q9UBD9 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CLCF1Q9UBD9 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CLCF1Q9UBD9 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC15.91■□□□□ 0.14
CLCF1Q9UBD9 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CLCF1Q9UBD9 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CLCF1Q9UBD9 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CLCF1Q9UBD9 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CLCF1Q9UBD9 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC15.91■□□□□ 0.14
CLCF1Q9UBD9 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
CLCF1Q9UBD9 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
CLCF1Q9UBD9 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CLCF1Q9UBD9 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CLCF1Q9UBD9 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CLCF1Q9UBD9 MED16-201ENST00000269814 1199 ntTSL 5 BASIC15.91■□□□□ 0.14
CLCF1Q9UBD9 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC15.91■□□□□ 0.14
CLCF1Q9UBD9 RBM17P3-201ENST00000417687 1192 ntBASIC15.91■□□□□ 0.14
CLCF1Q9UBD9 AC096633.1-201ENST00000422446 749 ntBASIC15.91■□□□□ 0.14
CLCF1Q9UBD9 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
CLCF1Q9UBD9 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC15.91■□□□□ 0.14
CLCF1Q9UBD9 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC15.91■□□□□ 0.14
CLCF1Q9UBD9 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
CLCF1Q9UBD9 AC008608.2-201ENST00000606089 416 ntBASIC15.91■□□□□ 0.14
CLCF1Q9UBD9 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC15.91■□□□□ 0.14
CLCF1Q9UBD9 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC15.91■□□□□ 0.14
CLCF1Q9UBD9 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CLCF1Q9UBD9 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
CLCF1Q9UBD9 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
CLCF1Q9UBD9 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
CLCF1Q9UBD9 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC15.91■□□□□ 0.14
CLCF1Q9UBD9 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
CLCF1Q9UBD9 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CLCF1Q9UBD9 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC15.91■□□□□ 0.14
CLCF1Q9UBD9 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CLCF1Q9UBD9 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC15.91■□□□□ 0.14
CLCF1Q9UBD9 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC15.91■□□□□ 0.14
CLCF1Q9UBD9 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC15.91■□□□□ 0.14
CLCF1Q9UBD9 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC15.91■□□□□ 0.14
CLCF1Q9UBD9 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC15.91■□□□□ 0.14
CLCF1Q9UBD9 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
CLCF1Q9UBD9 POR-209ENST00000439269 1858 ntTSL 2 BASIC15.91■□□□□ 0.14
CLCF1Q9UBD9 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
CLCF1Q9UBD9 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
CLCF1Q9UBD9 AC020763.4-201ENST00000623414 4170 ntBASIC15.9■□□□□ 0.14
CLCF1Q9UBD9 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CLCF1Q9UBD9 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CLCF1Q9UBD9 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CLCF1Q9UBD9 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC15.9■□□□□ 0.14
CLCF1Q9UBD9 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
CLCF1Q9UBD9 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
CLCF1Q9UBD9 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
CLCF1Q9UBD9 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC15.9■□□□□ 0.14
CLCF1Q9UBD9 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CLCF1Q9UBD9 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
CLCF1Q9UBD9 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
CLCF1Q9UBD9 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC15.9■□□□□ 0.14
CLCF1Q9UBD9 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CLCF1Q9UBD9 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC15.9■□□□□ 0.14
CLCF1Q9UBD9 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC15.9■□□□□ 0.14
CLCF1Q9UBD9 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CLCF1Q9UBD9 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
CLCF1Q9UBD9 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC15.9■□□□□ 0.14
CLCF1Q9UBD9 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC15.9■□□□□ 0.14
CLCF1Q9UBD9 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CLCF1Q9UBD9 CTNS-203ENST00000399306 803 ntTSL 3 BASIC15.9■□□□□ 0.14
CLCF1Q9UBD9 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
CLCF1Q9UBD9 AC007967.3-201ENST00000434308 558 ntBASIC15.9■□□□□ 0.14
CLCF1Q9UBD9 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC15.9■□□□□ 0.14
CLCF1Q9UBD9 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC15.9■□□□□ 0.14
CLCF1Q9UBD9 AL662844.1-201ENST00000546340 181 ntBASIC15.9■□□□□ 0.14
CLCF1Q9UBD9 IRF8-202ENST00000562492 946 ntTSL 3 BASIC15.9■□□□□ 0.14
CLCF1Q9UBD9 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC15.9■□□□□ 0.14
CLCF1Q9UBD9 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms