Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 AC116562.4-202ENST00000641738 218 ntBASIC17.71■□□□□ 0.43
MKS1Q9NXB0 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC17.71■□□□□ 0.43
MKS1Q9NXB0 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
MKS1Q9NXB0 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC17.71■□□□□ 0.43
MKS1Q9NXB0 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
MKS1Q9NXB0 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC17.71■□□□□ 0.43
MKS1Q9NXB0 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
MKS1Q9NXB0 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC17.71■□□□□ 0.43
MKS1Q9NXB0 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
MKS1Q9NXB0 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
MKS1Q9NXB0 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC17.7■□□□□ 0.42
MKS1Q9NXB0 MED29-202ENST00000594368 1471 ntTSL 2 BASIC17.7■□□□□ 0.42
MKS1Q9NXB0 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
MKS1Q9NXB0 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC17.7■□□□□ 0.42
MKS1Q9NXB0 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
MKS1Q9NXB0 TNRC18P3-201ENST00000441896 2691 ntBASIC17.7■□□□□ 0.42
MKS1Q9NXB0 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC17.7■□□□□ 0.42
MKS1Q9NXB0 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC17.7■□□□□ 0.42
MKS1Q9NXB0 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
MKS1Q9NXB0 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
MKS1Q9NXB0 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
MKS1Q9NXB0 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
MKS1Q9NXB0 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
MKS1Q9NXB0 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
MKS1Q9NXB0 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC17.7■□□□□ 0.42
MKS1Q9NXB0 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC17.7■□□□□ 0.42
MKS1Q9NXB0 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC17.7■□□□□ 0.42
MKS1Q9NXB0 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC17.7■□□□□ 0.42
MKS1Q9NXB0 ITM2C-210ENST00000620962 501 ntBASIC17.7■□□□□ 0.42
MKS1Q9NXB0 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
MKS1Q9NXB0 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
MKS1Q9NXB0 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
MKS1Q9NXB0 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
MKS1Q9NXB0 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
MKS1Q9NXB0 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
MKS1Q9NXB0 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
MKS1Q9NXB0 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC17.69■□□□□ 0.42
MKS1Q9NXB0 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
MKS1Q9NXB0 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
MKS1Q9NXB0 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
MKS1Q9NXB0 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
MKS1Q9NXB0 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
MKS1Q9NXB0 PVRIG2P-201ENST00000435460 978 ntBASIC17.69■□□□□ 0.42
MKS1Q9NXB0 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC17.69■□□□□ 0.42
MKS1Q9NXB0 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC17.69■□□□□ 0.42
MKS1Q9NXB0 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
MKS1Q9NXB0 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC17.69■□□□□ 0.42
MKS1Q9NXB0 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
MKS1Q9NXB0 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC17.69■□□□□ 0.42
MKS1Q9NXB0 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC17.69■□□□□ 0.42
MKS1Q9NXB0 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
MKS1Q9NXB0 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
MKS1Q9NXB0 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
MKS1Q9NXB0 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
MKS1Q9NXB0 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
MKS1Q9NXB0 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
MKS1Q9NXB0 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
MKS1Q9NXB0 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
MKS1Q9NXB0 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
MKS1Q9NXB0 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
MKS1Q9NXB0 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
MKS1Q9NXB0 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
MKS1Q9NXB0 KRT8P47-201ENST00000604727 1398 ntBASIC17.68■□□□□ 0.42
MKS1Q9NXB0 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
MKS1Q9NXB0 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
MKS1Q9NXB0 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
MKS1Q9NXB0 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
MKS1Q9NXB0 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
MKS1Q9NXB0 UNC93B2-201ENST00000285383 730 ntBASIC17.68■□□□□ 0.42
MKS1Q9NXB0 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
MKS1Q9NXB0 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC17.68■□□□□ 0.42
MKS1Q9NXB0 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC17.68■□□□□ 0.42
MKS1Q9NXB0 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC17.68■□□□□ 0.42
MKS1Q9NXB0 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
MKS1Q9NXB0 RBM17P1-201ENST00000453646 1190 ntBASIC17.68■□□□□ 0.42
MKS1Q9NXB0 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC17.68■□□□□ 0.42
MKS1Q9NXB0 REXO2-216ENST00000544196 452 ntTSL 3 BASIC17.68■□□□□ 0.42
MKS1Q9NXB0 MIR3917-201ENST00000580971 93 ntBASIC17.68■□□□□ 0.42
MKS1Q9NXB0 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
MKS1Q9NXB0 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
MKS1Q9NXB0 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC17.68■□□□□ 0.42
MKS1Q9NXB0 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
MKS1Q9NXB0 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
MKS1Q9NXB0 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
MKS1Q9NXB0 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
MKS1Q9NXB0 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
MKS1Q9NXB0 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
MKS1Q9NXB0 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
MKS1Q9NXB0 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
MKS1Q9NXB0 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC17.67■□□□□ 0.42
MKS1Q9NXB0 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
MKS1Q9NXB0 BCL2-203ENST00000589955 5011 ntBASIC17.67■□□□□ 0.42
MKS1Q9NXB0 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
MKS1Q9NXB0 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
MKS1Q9NXB0 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
MKS1Q9NXB0 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
MKS1Q9NXB0 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC17.67■□□□□ 0.42
MKS1Q9NXB0 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
MKS1Q9NXB0 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
MKS1Q9NXB0 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC17.67■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 68.4 ms