Protein–RNA interactions for Protein: Q9H9A6

LRRC40, Leucine-rich repeat-containing protein 40, humanhuman

Predictions only

Length 602 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC40Q9H9A6 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
LRRC40Q9H9A6 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
LRRC40Q9H9A6 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC18.24■□□□□ 0.51
LRRC40Q9H9A6 AC100803.2-201ENST00000562459 1963 ntBASIC18.24■□□□□ 0.51
LRRC40Q9H9A6 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
LRRC40Q9H9A6 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
LRRC40Q9H9A6 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC18.24■□□□□ 0.51
LRRC40Q9H9A6 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LRRC40Q9H9A6 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
LRRC40Q9H9A6 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
LRRC40Q9H9A6 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
LRRC40Q9H9A6 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LRRC40Q9H9A6 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
LRRC40Q9H9A6 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC18.23■□□□□ 0.51
LRRC40Q9H9A6 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
LRRC40Q9H9A6 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC18.23■□□□□ 0.51
LRRC40Q9H9A6 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
LRRC40Q9H9A6 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
LRRC40Q9H9A6 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LRRC40Q9H9A6 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LRRC40Q9H9A6 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC18.23■□□□□ 0.51
LRRC40Q9H9A6 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
LRRC40Q9H9A6 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LRRC40Q9H9A6 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
LRRC40Q9H9A6 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
LRRC40Q9H9A6 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC18.23■□□□□ 0.51
LRRC40Q9H9A6 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC18.23■□□□□ 0.51
LRRC40Q9H9A6 PPOX-219ENST00000544598 813 ntTSL 2 BASIC18.23■□□□□ 0.51
LRRC40Q9H9A6 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC18.23■□□□□ 0.51
LRRC40Q9H9A6 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC18.23■□□□□ 0.51
LRRC40Q9H9A6 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
LRRC40Q9H9A6 LITAF-220ENST00000620789 692 ntTSL 5 BASIC18.23■□□□□ 0.51
LRRC40Q9H9A6 AC006011.2-201ENST00000621313 1158 ntBASIC18.23■□□□□ 0.51
LRRC40Q9H9A6 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
LRRC40Q9H9A6 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC18.23■□□□□ 0.51
LRRC40Q9H9A6 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC18.23■□□□□ 0.51
LRRC40Q9H9A6 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC18.23■□□□□ 0.51
LRRC40Q9H9A6 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC18.23■□□□□ 0.51
LRRC40Q9H9A6 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
LRRC40Q9H9A6 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC18.23■□□□□ 0.51
LRRC40Q9H9A6 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC18.23■□□□□ 0.51
LRRC40Q9H9A6 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LRRC40Q9H9A6 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
LRRC40Q9H9A6 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC18.23■□□□□ 0.51
LRRC40Q9H9A6 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC18.23■□□□□ 0.51
LRRC40Q9H9A6 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC18.23■□□□□ 0.51
LRRC40Q9H9A6 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC18.22■□□□□ 0.51
LRRC40Q9H9A6 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
LRRC40Q9H9A6 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
LRRC40Q9H9A6 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
LRRC40Q9H9A6 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC18.22■□□□□ 0.51
LRRC40Q9H9A6 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
LRRC40Q9H9A6 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC18.22■□□□□ 0.51
LRRC40Q9H9A6 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
LRRC40Q9H9A6 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
LRRC40Q9H9A6 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
LRRC40Q9H9A6 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
LRRC40Q9H9A6 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
LRRC40Q9H9A6 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
LRRC40Q9H9A6 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
LRRC40Q9H9A6 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
LRRC40Q9H9A6 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
LRRC40Q9H9A6 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC18.22■□□□□ 0.51
LRRC40Q9H9A6 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
LRRC40Q9H9A6 AK4P3-201ENST00000418260 669 ntBASIC18.22■□□□□ 0.51
LRRC40Q9H9A6 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
LRRC40Q9H9A6 AC092597.1-201ENST00000487352 616 ntBASIC18.22■□□□□ 0.51
LRRC40Q9H9A6 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC18.22■□□□□ 0.51
LRRC40Q9H9A6 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC18.22■□□□□ 0.51
LRRC40Q9H9A6 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC18.22■□□□□ 0.51
LRRC40Q9H9A6 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
LRRC40Q9H9A6 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC18.22■□□□□ 0.51
LRRC40Q9H9A6 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
LRRC40Q9H9A6 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC18.22■□□□□ 0.51
LRRC40Q9H9A6 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC18.22■□□□□ 0.51
LRRC40Q9H9A6 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
LRRC40Q9H9A6 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC18.22■□□□□ 0.51
LRRC40Q9H9A6 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
LRRC40Q9H9A6 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC18.22■□□□□ 0.51
LRRC40Q9H9A6 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
LRRC40Q9H9A6 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LRRC40Q9H9A6 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LRRC40Q9H9A6 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LRRC40Q9H9A6 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC18.21■□□□□ 0.51
LRRC40Q9H9A6 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC18.21■□□□□ 0.51
LRRC40Q9H9A6 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LRRC40Q9H9A6 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
LRRC40Q9H9A6 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
LRRC40Q9H9A6 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC18.21■□□□□ 0.51
LRRC40Q9H9A6 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LRRC40Q9H9A6 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
LRRC40Q9H9A6 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
LRRC40Q9H9A6 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
LRRC40Q9H9A6 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC18.21■□□□□ 0.51
LRRC40Q9H9A6 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC18.21■□□□□ 0.51
LRRC40Q9H9A6 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
LRRC40Q9H9A6 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC18.21■□□□□ 0.51
LRRC40Q9H9A6 FGF14-AS2-201ENST00000606448 1074 ntBASIC18.21■□□□□ 0.51
LRRC40Q9H9A6 GXYLT1P4-201ENST00000613576 1192 ntBASIC18.21■□□□□ 0.51
LRRC40Q9H9A6 AC116407.2-201ENST00000613639 860 ntBASIC18.21■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 58.2 ms