Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC21.36■■□□□ 1.01
ZNF541Q9H0D2 HLA-DRB6-201ENST00000411500 1235 ntBASIC21.36■■□□□ 1.01
ZNF541Q9H0D2 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
ZNF541Q9H0D2 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC21.36■■□□□ 1.01
ZNF541Q9H0D2 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC21.36■■□□□ 1.01
ZNF541Q9H0D2 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC21.36■■□□□ 1.01
ZNF541Q9H0D2 DAD1-205ENST00000543337 501 ntTSL 3 BASIC21.36■■□□□ 1.01
ZNF541Q9H0D2 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
ZNF541Q9H0D2 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
ZNF541Q9H0D2 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC21.36■■□□□ 1.01
ZNF541Q9H0D2 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC21.36■■□□□ 1.01
ZNF541Q9H0D2 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
ZNF541Q9H0D2 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
ZNF541Q9H0D2 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC21.36■■□□□ 1.01
ZNF541Q9H0D2 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
ZNF541Q9H0D2 COBL-210ENST00000632460 1941 ntTSL 5 BASIC21.36■■□□□ 1.01
ZNF541Q9H0D2 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
ZNF541Q9H0D2 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC21.36■■□□□ 1.01
ZNF541Q9H0D2 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
ZNF541Q9H0D2 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC21.36■■□□□ 1.01
ZNF541Q9H0D2 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
ZNF541Q9H0D2 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC21.35■■□□□ 1.01
ZNF541Q9H0D2 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
ZNF541Q9H0D2 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC21.35■■□□□ 1.01
ZNF541Q9H0D2 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC21.35■■□□□ 1.01
ZNF541Q9H0D2 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC21.35■■□□□ 1.01
ZNF541Q9H0D2 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC21.35■■□□□ 1.01
ZNF541Q9H0D2 AF228730.6-201ENST00000641497 218 ntBASIC21.35■■□□□ 1.01
ZNF541Q9H0D2 AC084121.3-201ENST00000641716 218 ntBASIC21.35■■□□□ 1.01
ZNF541Q9H0D2 AC105233.6-201ENST00000642093 218 ntBASIC21.35■■□□□ 1.01
ZNF541Q9H0D2 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
ZNF541Q9H0D2 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
ZNF541Q9H0D2 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
ZNF541Q9H0D2 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
ZNF541Q9H0D2 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
ZNF541Q9H0D2 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
ZNF541Q9H0D2 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC21.35■■□□□ 1.01
ZNF541Q9H0D2 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
ZNF541Q9H0D2 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC21.35■■□□□ 1.01
ZNF541Q9H0D2 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
ZNF541Q9H0D2 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC21.35■■□□□ 1.01
ZNF541Q9H0D2 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
ZNF541Q9H0D2 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC21.35■■□□□ 1.01
ZNF541Q9H0D2 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
ZNF541Q9H0D2 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
ZNF541Q9H0D2 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC21.34■■□□□ 1.01
ZNF541Q9H0D2 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC21.34■■□□□ 1.01
ZNF541Q9H0D2 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
ZNF541Q9H0D2 GID4-202ENST00000376345 1391 ntTSL 3 BASIC21.34■■□□□ 1.01
ZNF541Q9H0D2 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
ZNF541Q9H0D2 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC21.34■■□□□ 1.01
ZNF541Q9H0D2 S100A2-206ENST00000497140 697 ntTSL 2 BASIC21.34■■□□□ 1.01
ZNF541Q9H0D2 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC21.34■■□□□ 1.01
ZNF541Q9H0D2 AC069262.1-201ENST00000539058 672 ntBASIC21.34■■□□□ 1.01
ZNF541Q9H0D2 RBM7-207ENST00000544582 692 ntTSL 3 BASIC21.34■■□□□ 1.01
ZNF541Q9H0D2 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC21.34■■□□□ 1.01
ZNF541Q9H0D2 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC21.34■■□□□ 1.01
ZNF541Q9H0D2 AC022145.2-201ENST00000598203 171 ntBASIC21.34■■□□□ 1.01
ZNF541Q9H0D2 AL035252.4-201ENST00000624174 288 ntBASIC21.34■■□□□ 1.01
ZNF541Q9H0D2 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC21.34■■□□□ 1.01
ZNF541Q9H0D2 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC21.34■■□□□ 1.01
ZNF541Q9H0D2 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
ZNF541Q9H0D2 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
ZNF541Q9H0D2 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC21.34■■□□□ 1.01
ZNF541Q9H0D2 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
ZNF541Q9H0D2 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
ZNF541Q9H0D2 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
ZNF541Q9H0D2 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
ZNF541Q9H0D2 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
ZNF541Q9H0D2 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC21.34■■□□□ 1.01
ZNF541Q9H0D2 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
ZNF541Q9H0D2 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
ZNF541Q9H0D2 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC21.33■■□□□ 1.01
ZNF541Q9H0D2 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC21.33■■□□□ 1.01
ZNF541Q9H0D2 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
ZNF541Q9H0D2 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1.01
ZNF541Q9H0D2 COX5BP2-201ENST00000392354 334 ntBASIC21.33■■□□□ 1.01
ZNF541Q9H0D2 BID-204ENST00000399767 2129 ntTSL 2 BASIC21.33■■□□□ 1.01
ZNF541Q9H0D2 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC21.33■■□□□ 1.01
ZNF541Q9H0D2 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC21.33■■□□□ 1.01
ZNF541Q9H0D2 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC21.33■■□□□ 1.01
ZNF541Q9H0D2 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
ZNF541Q9H0D2 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC21.33■■□□□ 1.01
ZNF541Q9H0D2 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
ZNF541Q9H0D2 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC21.33■■□□□ 1.01
ZNF541Q9H0D2 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
ZNF541Q9H0D2 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC21.33■■□□□ 1
ZNF541Q9H0D2 AL049757.1-201ENST00000616842 1596 ntBASIC21.33■■□□□ 1
ZNF541Q9H0D2 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC21.33■■□□□ 1
ZNF541Q9H0D2 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
ZNF541Q9H0D2 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC21.33■■□□□ 1
ZNF541Q9H0D2 AFG3L1P-217ENST00000557444 2447 ntBASIC21.33■■□□□ 1
ZNF541Q9H0D2 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC21.32■■□□□ 1
ZNF541Q9H0D2 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC21.32■■□□□ 1
ZNF541Q9H0D2 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
ZNF541Q9H0D2 KLF4P1-201ENST00000412782 1185 ntBASIC21.32■■□□□ 1
ZNF541Q9H0D2 AC023141.5-201ENST00000458585 616 ntBASIC21.32■■□□□ 1
ZNF541Q9H0D2 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC21.32■■□□□ 1
ZNF541Q9H0D2 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC21.32■■□□□ 1
ZNF541Q9H0D2 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC21.32■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 76.2 ms