Protein–RNA interactions for Protein: Q96P44

COL21A1, Collagen alpha-1(XXI) chain, humanhuman

Predictions only

Length 957 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL21A1Q96P44 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL21A1Q96P44 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL21A1Q96P44 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL21A1Q96P44 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
COL21A1Q96P44 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL21A1Q96P44 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL21A1Q96P44 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
COL21A1Q96P44 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
COL21A1Q96P44 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
COL21A1Q96P44 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC16.98■□□□□ 0.31
COL21A1Q96P44 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
COL21A1Q96P44 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
COL21A1Q96P44 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
COL21A1Q96P44 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
COL21A1Q96P44 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
COL21A1Q96P44 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
COL21A1Q96P44 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
COL21A1Q96P44 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
COL21A1Q96P44 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC16.98■□□□□ 0.31
COL21A1Q96P44 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
COL21A1Q96P44 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
COL21A1Q96P44 AC063952.2-201ENST00000498792 1227 ntBASIC16.98■□□□□ 0.31
COL21A1Q96P44 LINC01238-205ENST00000567549 1107 ntBASIC16.98■□□□□ 0.31
COL21A1Q96P44 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC16.98■□□□□ 0.31
COL21A1Q96P44 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
COL21A1Q96P44 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC16.98■□□□□ 0.31
COL21A1Q96P44 CEP83-AS1-201ENST00000623122 2482 ntBASIC16.98■□□□□ 0.31
COL21A1Q96P44 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
COL21A1Q96P44 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
COL21A1Q96P44 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
COL21A1Q96P44 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
COL21A1Q96P44 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC16.98■□□□□ 0.31
COL21A1Q96P44 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
COL21A1Q96P44 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC16.98■□□□□ 0.31
COL21A1Q96P44 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
COL21A1Q96P44 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
COL21A1Q96P44 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
COL21A1Q96P44 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC16.97■□□□□ 0.31
COL21A1Q96P44 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
COL21A1Q96P44 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
COL21A1Q96P44 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC16.97■□□□□ 0.31
COL21A1Q96P44 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
COL21A1Q96P44 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
COL21A1Q96P44 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
COL21A1Q96P44 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
COL21A1Q96P44 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
COL21A1Q96P44 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC16.97■□□□□ 0.31
COL21A1Q96P44 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
COL21A1Q96P44 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
COL21A1Q96P44 STARP1-201ENST00000397973 869 ntBASIC16.97■□□□□ 0.31
COL21A1Q96P44 RASA4DP-201ENST00000460726 1199 ntBASIC16.97■□□□□ 0.31
COL21A1Q96P44 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC16.97■□□□□ 0.31
COL21A1Q96P44 AL049597.2-201ENST00000565575 961 ntBASIC16.97■□□□□ 0.31
COL21A1Q96P44 AL157888.1-201ENST00000631930 593 ntBASIC16.97■□□□□ 0.31
COL21A1Q96P44 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
COL21A1Q96P44 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC16.97■□□□□ 0.31
COL21A1Q96P44 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
COL21A1Q96P44 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC16.97■□□□□ 0.31
COL21A1Q96P44 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
COL21A1Q96P44 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC16.97■□□□□ 0.31
COL21A1Q96P44 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
COL21A1Q96P44 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
COL21A1Q96P44 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
COL21A1Q96P44 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC16.97■□□□□ 0.31
COL21A1Q96P44 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
COL21A1Q96P44 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
COL21A1Q96P44 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
COL21A1Q96P44 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC16.96■□□□□ 0.31
COL21A1Q96P44 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
COL21A1Q96P44 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
COL21A1Q96P44 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC16.96■□□□□ 0.31
COL21A1Q96P44 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
COL21A1Q96P44 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
COL21A1Q96P44 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
COL21A1Q96P44 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
COL21A1Q96P44 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC16.96■□□□□ 0.31
COL21A1Q96P44 SNX5-210ENST00000481323 562 ntTSL 3 BASIC16.96■□□□□ 0.31
COL21A1Q96P44 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC16.96■□□□□ 0.31
COL21A1Q96P44 AC022616.7-201ENST00000525383 220 ntBASIC16.96■□□□□ 0.31
COL21A1Q96P44 LTBR-211ENST00000543190 785 ntTSL 3 BASIC16.96■□□□□ 0.31
COL21A1Q96P44 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC16.96■□□□□ 0.31
COL21A1Q96P44 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
COL21A1Q96P44 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
COL21A1Q96P44 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
COL21A1Q96P44 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
COL21A1Q96P44 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
COL21A1Q96P44 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC16.96■□□□□ 0.31
COL21A1Q96P44 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
COL21A1Q96P44 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC16.96■□□□□ 0.3
COL21A1Q96P44 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
COL21A1Q96P44 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC16.96■□□□□ 0.3
COL21A1Q96P44 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.3
COL21A1Q96P44 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC16.96■□□□□ 0.3
COL21A1Q96P44 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
COL21A1Q96P44 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC16.96■□□□□ 0.3
COL21A1Q96P44 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL21A1Q96P44 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL21A1Q96P44 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
COL21A1Q96P44 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL21A1Q96P44 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms