Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
HDDC3Q8N4P3 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC17.96■□□□□ 0.46
HDDC3Q8N4P3 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC17.96■□□□□ 0.46
HDDC3Q8N4P3 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HDDC3Q8N4P3 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC17.95■□□□□ 0.46
HDDC3Q8N4P3 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HDDC3Q8N4P3 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
HDDC3Q8N4P3 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
HDDC3Q8N4P3 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC17.95■□□□□ 0.46
HDDC3Q8N4P3 AC093010.1-201ENST00000473625 1624 ntBASIC17.95■□□□□ 0.46
HDDC3Q8N4P3 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
HDDC3Q8N4P3 PAN3-AS1-201ENST00000563843 1351 ntBASIC17.95■□□□□ 0.46
HDDC3Q8N4P3 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HDDC3Q8N4P3 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HDDC3Q8N4P3 AC087289.5-201ENST00000586076 3175 ntBASIC17.95■□□□□ 0.46
HDDC3Q8N4P3 TBC1D3P5-201ENST00000579401 1545 ntBASIC17.95■□□□□ 0.46
HDDC3Q8N4P3 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HDDC3Q8N4P3 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HDDC3Q8N4P3 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
HDDC3Q8N4P3 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HDDC3Q8N4P3 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC17.95■□□□□ 0.46
HDDC3Q8N4P3 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HDDC3Q8N4P3 RPL18-209ENST00000550645 463 ntTSL 5 BASIC17.95■□□□□ 0.46
HDDC3Q8N4P3 RPL18-214ENST00000552588 559 ntTSL 3 BASIC17.95■□□□□ 0.46
HDDC3Q8N4P3 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
HDDC3Q8N4P3 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC17.95■□□□□ 0.46
HDDC3Q8N4P3 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HDDC3Q8N4P3 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
HDDC3Q8N4P3 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
HDDC3Q8N4P3 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
HDDC3Q8N4P3 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC17.95■□□□□ 0.46
HDDC3Q8N4P3 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
HDDC3Q8N4P3 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC17.95■□□□□ 0.46
HDDC3Q8N4P3 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HDDC3Q8N4P3 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HDDC3Q8N4P3 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
HDDC3Q8N4P3 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC17.94■□□□□ 0.46
HDDC3Q8N4P3 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
HDDC3Q8N4P3 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC17.94■□□□□ 0.46
HDDC3Q8N4P3 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC17.94■□□□□ 0.46
HDDC3Q8N4P3 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
HDDC3Q8N4P3 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
HDDC3Q8N4P3 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
HDDC3Q8N4P3 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
HDDC3Q8N4P3 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC17.94■□□□□ 0.46
HDDC3Q8N4P3 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
HDDC3Q8N4P3 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
HDDC3Q8N4P3 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
HDDC3Q8N4P3 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC17.94■□□□□ 0.46
HDDC3Q8N4P3 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
HDDC3Q8N4P3 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC17.94■□□□□ 0.46
HDDC3Q8N4P3 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC17.94■□□□□ 0.46
HDDC3Q8N4P3 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
HDDC3Q8N4P3 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC17.94■□□□□ 0.46
HDDC3Q8N4P3 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC17.94■□□□□ 0.46
HDDC3Q8N4P3 AC005104.2-201ENST00000427818 678 ntBASIC17.94■□□□□ 0.46
HDDC3Q8N4P3 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
HDDC3Q8N4P3 ABCD1P5-201ENST00000445663 754 ntBASIC17.94■□□□□ 0.46
HDDC3Q8N4P3 RBSN-204ENST00000449050 903 ntTSL 2 BASIC17.94■□□□□ 0.46
HDDC3Q8N4P3 AC018712.1-201ENST00000455767 687 ntBASIC17.94■□□□□ 0.46
HDDC3Q8N4P3 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
HDDC3Q8N4P3 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
HDDC3Q8N4P3 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC17.94■□□□□ 0.46
HDDC3Q8N4P3 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC17.94■□□□□ 0.46
HDDC3Q8N4P3 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
HDDC3Q8N4P3 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC17.94■□□□□ 0.46
HDDC3Q8N4P3 AL691403.2-201ENST00000618460 490 ntBASIC17.94■□□□□ 0.46
HDDC3Q8N4P3 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC17.94■□□□□ 0.46
HDDC3Q8N4P3 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
HDDC3Q8N4P3 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
HDDC3Q8N4P3 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC17.94■□□□□ 0.46
HDDC3Q8N4P3 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
HDDC3Q8N4P3 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
HDDC3Q8N4P3 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
HDDC3Q8N4P3 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC17.94■□□□□ 0.46
HDDC3Q8N4P3 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
HDDC3Q8N4P3 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
HDDC3Q8N4P3 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
HDDC3Q8N4P3 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
HDDC3Q8N4P3 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
HDDC3Q8N4P3 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC17.94■□□□□ 0.46
HDDC3Q8N4P3 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
HDDC3Q8N4P3 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
HDDC3Q8N4P3 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
HDDC3Q8N4P3 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
HDDC3Q8N4P3 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
HDDC3Q8N4P3 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
HDDC3Q8N4P3 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC17.93■□□□□ 0.46
HDDC3Q8N4P3 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
HDDC3Q8N4P3 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC17.93■□□□□ 0.46
HDDC3Q8N4P3 AP005117.1-201ENST00000584346 1413 ntBASIC17.93■□□□□ 0.46
HDDC3Q8N4P3 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
HDDC3Q8N4P3 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
HDDC3Q8N4P3 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
HDDC3Q8N4P3 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
HDDC3Q8N4P3 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC17.93■□□□□ 0.46
HDDC3Q8N4P3 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
HDDC3Q8N4P3 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC17.93■□□□□ 0.46
HDDC3Q8N4P3 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC17.93■□□□□ 0.46
HDDC3Q8N4P3 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC17.93■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 43 ms