Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 PNKD-204ENST00000436005 978 ntTSL 5 BASIC24.19■■□□□ 1.46
NPHP3Q7Z494 PAWRP1-201ENST00000451083 565 ntBASIC24.19■■□□□ 1.46
NPHP3Q7Z494 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
NPHP3Q7Z494 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC24.19■■□□□ 1.46
NPHP3Q7Z494 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC24.19■■□□□ 1.46
NPHP3Q7Z494 AC005498.2-205ENST00000593218 784 ntBASIC24.19■■□□□ 1.46
NPHP3Q7Z494 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC24.19■■□□□ 1.46
NPHP3Q7Z494 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC24.19■■□□□ 1.46
NPHP3Q7Z494 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
NPHP3Q7Z494 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC24.19■■□□□ 1.46
NPHP3Q7Z494 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
NPHP3Q7Z494 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC24.19■■□□□ 1.46
NPHP3Q7Z494 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC24.19■■□□□ 1.46
NPHP3Q7Z494 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
NPHP3Q7Z494 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
NPHP3Q7Z494 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
NPHP3Q7Z494 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
NPHP3Q7Z494 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
NPHP3Q7Z494 SIGLEC30P-201ENST00000455569 941 ntBASIC24.18■■□□□ 1.46
NPHP3Q7Z494 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC24.18■■□□□ 1.46
NPHP3Q7Z494 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC24.18■■□□□ 1.46
NPHP3Q7Z494 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC24.18■■□□□ 1.46
NPHP3Q7Z494 OR7E47P-204ENST00000575924 449 ntBASIC24.18■■□□□ 1.46
NPHP3Q7Z494 AC138761.1-201ENST00000584393 385 ntBASIC24.18■■□□□ 1.46
NPHP3Q7Z494 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC24.18■■□□□ 1.46
NPHP3Q7Z494 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC24.18■■□□□ 1.46
NPHP3Q7Z494 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
NPHP3Q7Z494 SIRPAP1-201ENST00000448467 1770 ntBASIC24.18■■□□□ 1.46
NPHP3Q7Z494 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC24.18■■□□□ 1.46
NPHP3Q7Z494 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC24.18■■□□□ 1.46
NPHP3Q7Z494 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
NPHP3Q7Z494 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
NPHP3Q7Z494 AC025580.3-201ENST00000617932 1424 ntBASIC24.18■■□□□ 1.46
NPHP3Q7Z494 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
NPHP3Q7Z494 AC007952.6-201ENST00000573168 2673 ntBASIC24.18■■□□□ 1.46
NPHP3Q7Z494 AC003957.1-201ENST00000625108 2673 ntBASIC24.18■■□□□ 1.46
NPHP3Q7Z494 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
NPHP3Q7Z494 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC24.17■■□□□ 1.46
NPHP3Q7Z494 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC24.17■■□□□ 1.46
NPHP3Q7Z494 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
NPHP3Q7Z494 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
NPHP3Q7Z494 CBR1-202ENST00000399191 838 ntTSL 3 BASIC24.17■■□□□ 1.46
NPHP3Q7Z494 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC24.17■■□□□ 1.46
NPHP3Q7Z494 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC24.17■■□□□ 1.46
NPHP3Q7Z494 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC24.17■■□□□ 1.46
NPHP3Q7Z494 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
NPHP3Q7Z494 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC24.17■■□□□ 1.46
NPHP3Q7Z494 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC24.17■■□□□ 1.46
NPHP3Q7Z494 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC24.17■■□□□ 1.46
NPHP3Q7Z494 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC24.17■■□□□ 1.46
NPHP3Q7Z494 AC105339.1-204ENST00000636249 355 ntBASIC24.17■■□□□ 1.46
NPHP3Q7Z494 AC092902.6-201ENST00000641783 218 ntBASIC24.17■■□□□ 1.46
NPHP3Q7Z494 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
NPHP3Q7Z494 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
NPHP3Q7Z494 GMCL1P1-201ENST00000463439 1581 ntBASIC24.17■■□□□ 1.46
NPHP3Q7Z494 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
NPHP3Q7Z494 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC24.16■■□□□ 1.46
NPHP3Q7Z494 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC24.16■■□□□ 1.46
NPHP3Q7Z494 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC24.16■■□□□ 1.46
NPHP3Q7Z494 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC24.16■■□□□ 1.46
NPHP3Q7Z494 AC003669.1-201ENST00000334569 611 ntBASIC24.16■■□□□ 1.46
NPHP3Q7Z494 NEK7-201ENST00000367383 586 ntTSL 2 BASIC24.16■■□□□ 1.46
NPHP3Q7Z494 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC24.16■■□□□ 1.46
NPHP3Q7Z494 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC24.16■■□□□ 1.46
NPHP3Q7Z494 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
NPHP3Q7Z494 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC24.16■■□□□ 1.46
NPHP3Q7Z494 AC025678.2-201ENST00000562061 970 ntBASIC24.16■■□□□ 1.46
NPHP3Q7Z494 MIR4745-201ENST00000577608 62 ntBASIC24.16■■□□□ 1.46
NPHP3Q7Z494 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC24.16■■□□□ 1.46
NPHP3Q7Z494 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC24.16■■□□□ 1.46
NPHP3Q7Z494 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC24.16■■□□□ 1.46
NPHP3Q7Z494 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC24.16■■□□□ 1.46
NPHP3Q7Z494 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC24.16■■□□□ 1.46
NPHP3Q7Z494 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC24.16■■□□□ 1.46
NPHP3Q7Z494 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC24.16■■□□□ 1.46
NPHP3Q7Z494 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC24.16■■□□□ 1.46
NPHP3Q7Z494 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
NPHP3Q7Z494 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
NPHP3Q7Z494 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
NPHP3Q7Z494 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
NPHP3Q7Z494 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
NPHP3Q7Z494 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
NPHP3Q7Z494 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC24.16■■□□□ 1.46
NPHP3Q7Z494 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC24.16■■□□□ 1.46
NPHP3Q7Z494 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC24.16■■□□□ 1.46
NPHP3Q7Z494 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC24.16■■□□□ 1.46
NPHP3Q7Z494 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC24.16■■□□□ 1.46
NPHP3Q7Z494 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC24.15■■□□□ 1.46
NPHP3Q7Z494 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
NPHP3Q7Z494 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC24.15■■□□□ 1.46
NPHP3Q7Z494 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC24.15■■□□□ 1.46
NPHP3Q7Z494 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC24.15■■□□□ 1.46
NPHP3Q7Z494 INO80C-206ENST00000586489 594 ntTSL 3 BASIC24.15■■□□□ 1.46
NPHP3Q7Z494 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC24.15■■□□□ 1.46
NPHP3Q7Z494 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC24.15■■□□□ 1.46
NPHP3Q7Z494 AC005082.1-201ENST00000413042 2259 ntBASIC24.15■■□□□ 1.46
NPHP3Q7Z494 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC24.15■■□□□ 1.46
NPHP3Q7Z494 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
NPHP3Q7Z494 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
NPHP3Q7Z494 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms