Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC16.05■□□□□ 0.16
H3F3AP84243 TSSC2-201ENST00000450217 709 ntBASIC16.05■□□□□ 0.16
H3F3AP84243 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC16.05■□□□□ 0.16
H3F3AP84243 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
H3F3AP84243 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
H3F3AP84243 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
H3F3AP84243 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
H3F3AP84243 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
H3F3AP84243 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
H3F3AP84243 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
H3F3AP84243 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
H3F3AP84243 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
H3F3AP84243 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC16.05■□□□□ 0.16
H3F3AP84243 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
H3F3AP84243 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
H3F3AP84243 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
H3F3AP84243 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
H3F3AP84243 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
H3F3AP84243 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
H3F3AP84243 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
H3F3AP84243 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
H3F3AP84243 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
H3F3AP84243 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
H3F3AP84243 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
H3F3AP84243 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
H3F3AP84243 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
H3F3AP84243 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
H3F3AP84243 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
H3F3AP84243 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC16.04■□□□□ 0.16
H3F3AP84243 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
H3F3AP84243 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC16.04■□□□□ 0.16
H3F3AP84243 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC16.04■□□□□ 0.16
H3F3AP84243 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
H3F3AP84243 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC16.04■□□□□ 0.16
H3F3AP84243 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
H3F3AP84243 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
H3F3AP84243 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
H3F3AP84243 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC16.04■□□□□ 0.16
H3F3AP84243 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC16.04■□□□□ 0.16
H3F3AP84243 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC16.04■□□□□ 0.16
H3F3AP84243 AL592071.1-201ENST00000611956 408 ntBASIC16.04■□□□□ 0.16
H3F3AP84243 IGHV3-41-201ENST00000613121 348 ntBASIC16.04■□□□□ 0.16
H3F3AP84243 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC16.04■□□□□ 0.16
H3F3AP84243 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
H3F3AP84243 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC16.04■□□□□ 0.16
H3F3AP84243 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
H3F3AP84243 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC16.04■□□□□ 0.16
H3F3AP84243 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC16.04■□□□□ 0.16
H3F3AP84243 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
H3F3AP84243 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC16.04■□□□□ 0.16
H3F3AP84243 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
H3F3AP84243 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
H3F3AP84243 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
H3F3AP84243 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
H3F3AP84243 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
H3F3AP84243 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC16.03■□□□□ 0.16
H3F3AP84243 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
H3F3AP84243 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
H3F3AP84243 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC16.03■□□□□ 0.16
H3F3AP84243 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
H3F3AP84243 AC008764.6-201ENST00000595909 2069 ntBASIC16.03■□□□□ 0.16
H3F3AP84243 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC16.03■□□□□ 0.16
H3F3AP84243 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC16.03■□□□□ 0.16
H3F3AP84243 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
H3F3AP84243 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
H3F3AP84243 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
H3F3AP84243 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
H3F3AP84243 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
H3F3AP84243 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
H3F3AP84243 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
H3F3AP84243 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
H3F3AP84243 AP002383.4-201ENST00000442518 975 ntBASIC16.03■□□□□ 0.16
H3F3AP84243 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC16.03■□□□□ 0.16
H3F3AP84243 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC16.03■□□□□ 0.16
H3F3AP84243 AC069148.1-201ENST00000608741 768 ntBASIC16.03■□□□□ 0.16
H3F3AP84243 AC124864.1-201ENST00000623408 392 ntBASIC16.03■□□□□ 0.16
H3F3AP84243 AC020763.4-201ENST00000623414 4170 ntBASIC16.03■□□□□ 0.16
H3F3AP84243 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
H3F3AP84243 AC100803.2-201ENST00000562459 1963 ntBASIC16.03■□□□□ 0.16
H3F3AP84243 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
H3F3AP84243 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC16.03■□□□□ 0.16
H3F3AP84243 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC16.03■□□□□ 0.16
H3F3AP84243 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC16.03■□□□□ 0.16
H3F3AP84243 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
H3F3AP84243 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC16.03■□□□□ 0.16
H3F3AP84243 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
H3F3AP84243 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
H3F3AP84243 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
H3F3AP84243 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
H3F3AP84243 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
H3F3AP84243 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
H3F3AP84243 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC16.02■□□□□ 0.16
H3F3AP84243 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
H3F3AP84243 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
H3F3AP84243 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
H3F3AP84243 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
H3F3AP84243 AL845331.1-201ENST00000424978 1190 ntBASIC16.02■□□□□ 0.16
H3F3AP84243 DRAXINP1-201ENST00000437611 948 ntBASIC16.02■□□□□ 0.16
H3F3AP84243 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
H3F3AP84243 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC16.02■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms