Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC20.33■□□□□ 0.85
CCNA1P78396 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC20.33■□□□□ 0.85
CCNA1P78396 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC20.33■□□□□ 0.85
CCNA1P78396 TCAP-202ENST00000578283 583 ntTSL 5 BASIC20.33■□□□□ 0.85
CCNA1P78396 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
CCNA1P78396 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC20.33■□□□□ 0.85
CCNA1P78396 COPE-211ENST00000600932 1144 ntTSL 5 BASIC20.33■□□□□ 0.85
CCNA1P78396 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CCNA1P78396 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC20.33■□□□□ 0.85
CCNA1P78396 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
CCNA1P78396 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.84
CCNA1P78396 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
CCNA1P78396 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC20.33■□□□□ 0.84
CCNA1P78396 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC20.33■□□□□ 0.84
CCNA1P78396 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC20.32■□□□□ 0.84
CCNA1P78396 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCNA1P78396 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCNA1P78396 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CCNA1P78396 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC20.32■□□□□ 0.84
CCNA1P78396 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CCNA1P78396 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CCNA1P78396 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC20.32■□□□□ 0.84
CCNA1P78396 AC093010.1-201ENST00000473625 1624 ntBASIC20.32■□□□□ 0.84
CCNA1P78396 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC20.32■□□□□ 0.84
CCNA1P78396 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCNA1P78396 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
CCNA1P78396 DUTP2-201ENST00000519164 463 ntBASIC20.32■□□□□ 0.84
CCNA1P78396 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
CCNA1P78396 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC20.32■□□□□ 0.84
CCNA1P78396 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC20.32■□□□□ 0.84
CCNA1P78396 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC20.32■□□□□ 0.84
CCNA1P78396 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
CCNA1P78396 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CCNA1P78396 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CCNA1P78396 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCNA1P78396 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCNA1P78396 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CCNA1P78396 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC20.32■□□□□ 0.84
CCNA1P78396 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCNA1P78396 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC20.32■□□□□ 0.84
CCNA1P78396 KRT8P47-201ENST00000604727 1398 ntBASIC20.32■□□□□ 0.84
CCNA1P78396 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
CCNA1P78396 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CCNA1P78396 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCNA1P78396 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCNA1P78396 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC20.31■□□□□ 0.84
CCNA1P78396 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCNA1P78396 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCNA1P78396 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCNA1P78396 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCNA1P78396 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
CCNA1P78396 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC20.31■□□□□ 0.84
CCNA1P78396 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC20.31■□□□□ 0.84
CCNA1P78396 AC211486.1-202ENST00000416371 468 ntBASIC20.31■□□□□ 0.84
CCNA1P78396 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC20.31■□□□□ 0.84
CCNA1P78396 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC20.31■□□□□ 0.84
CCNA1P78396 AC211476.1-201ENST00000503899 468 ntBASIC20.31■□□□□ 0.84
CCNA1P78396 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC20.31■□□□□ 0.84
CCNA1P78396 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCNA1P78396 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCNA1P78396 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC20.31■□□□□ 0.84
CCNA1P78396 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC20.31■□□□□ 0.84
CCNA1P78396 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCNA1P78396 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCNA1P78396 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC20.31■□□□□ 0.84
CCNA1P78396 AC120498.9-201ENST00000339021 3867 ntBASIC20.3■□□□□ 0.84
CCNA1P78396 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCNA1P78396 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CCNA1P78396 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CCNA1P78396 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
CCNA1P78396 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC20.3■□□□□ 0.84
CCNA1P78396 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CCNA1P78396 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCNA1P78396 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC20.3■□□□□ 0.84
CCNA1P78396 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC20.3■□□□□ 0.84
CCNA1P78396 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC20.3■□□□□ 0.84
CCNA1P78396 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CCNA1P78396 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC20.3■□□□□ 0.84
CCNA1P78396 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CCNA1P78396 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CCNA1P78396 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC20.3■□□□□ 0.84
CCNA1P78396 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
CCNA1P78396 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
CCNA1P78396 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCNA1P78396 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCNA1P78396 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CCNA1P78396 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
CCNA1P78396 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
CCNA1P78396 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC20.3■□□□□ 0.84
CCNA1P78396 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCNA1P78396 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
CCNA1P78396 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC20.3■□□□□ 0.84
CCNA1P78396 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCNA1P78396 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCNA1P78396 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC20.29■□□□□ 0.84
CCNA1P78396 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CCNA1P78396 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC20.29■□□□□ 0.84
CCNA1P78396 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCNA1P78396 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC20.29■□□□□ 0.84
CCNA1P78396 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC20.29■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms