Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC15.4■□□□□ 0.06
ABCA4P78363 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
ABCA4P78363 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC15.4■□□□□ 0.06
ABCA4P78363 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
ABCA4P78363 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
ABCA4P78363 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
ABCA4P78363 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC15.4■□□□□ 0.06
ABCA4P78363 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
ABCA4P78363 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
ABCA4P78363 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
ABCA4P78363 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
ABCA4P78363 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
ABCA4P78363 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC15.4■□□□□ 0.06
ABCA4P78363 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
ABCA4P78363 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
ABCA4P78363 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC15.4■□□□□ 0.06
ABCA4P78363 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC15.4■□□□□ 0.06
ABCA4P78363 AC105339.3-201ENST00000560043 636 ntBASIC15.4■□□□□ 0.06
ABCA4P78363 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
ABCA4P78363 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC15.39■□□□□ 0.06
ABCA4P78363 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC15.39■□□□□ 0.06
ABCA4P78363 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
ABCA4P78363 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
ABCA4P78363 SIGLEC16-201ENST00000599858 1437 ntBASIC15.39■□□□□ 0.05
ABCA4P78363 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC15.39■□□□□ 0.05
ABCA4P78363 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
ABCA4P78363 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC15.39■□□□□ 0.05
ABCA4P78363 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
ABCA4P78363 AC132938.6-201ENST00000623828 1655 ntBASIC15.39■□□□□ 0.05
ABCA4P78363 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
ABCA4P78363 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC15.39■□□□□ 0.05
ABCA4P78363 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC15.39■□□□□ 0.05
ABCA4P78363 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC15.39■□□□□ 0.05
ABCA4P78363 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
ABCA4P78363 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
ABCA4P78363 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
ABCA4P78363 FUOM-202ENST00000368551 628 ntTSL 3 BASIC15.39■□□□□ 0.05
ABCA4P78363 LAGE3P1-201ENST00000425356 484 ntBASIC15.39■□□□□ 0.05
ABCA4P78363 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC15.39■□□□□ 0.05
ABCA4P78363 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC15.39■□□□□ 0.05
ABCA4P78363 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
ABCA4P78363 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC15.39■□□□□ 0.05
ABCA4P78363 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC15.39■□□□□ 0.05
ABCA4P78363 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
ABCA4P78363 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
ABCA4P78363 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC15.39■□□□□ 0.05
ABCA4P78363 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
ABCA4P78363 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
ABCA4P78363 ANO7L1-203ENST00000602586 1720 ntBASIC15.38■□□□□ 0.05
ABCA4P78363 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC15.38■□□□□ 0.05
ABCA4P78363 UNC93B6-202ENST00000528242 690 ntBASIC15.38■□□□□ 0.05
ABCA4P78363 AC126763.1-201ENST00000552015 2118 ntBASIC15.38■□□□□ 0.05
ABCA4P78363 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
ABCA4P78363 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
ABCA4P78363 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
ABCA4P78363 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC15.38■□□□□ 0.05
ABCA4P78363 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
ABCA4P78363 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
ABCA4P78363 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC15.38■□□□□ 0.05
ABCA4P78363 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
ABCA4P78363 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC15.38■□□□□ 0.05
ABCA4P78363 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
ABCA4P78363 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
ABCA4P78363 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC15.38■□□□□ 0.05
ABCA4P78363 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
ABCA4P78363 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
ABCA4P78363 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC15.38■□□□□ 0.05
ABCA4P78363 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC15.38■□□□□ 0.05
ABCA4P78363 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
ABCA4P78363 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
ABCA4P78363 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
ABCA4P78363 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
ABCA4P78363 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC15.38■□□□□ 0.05
ABCA4P78363 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC15.38■□□□□ 0.05
ABCA4P78363 CYMP-203ENST00000474680 1263 ntBASIC15.38■□□□□ 0.05
ABCA4P78363 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC15.38■□□□□ 0.05
ABCA4P78363 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC15.38■□□□□ 0.05
ABCA4P78363 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC15.38■□□□□ 0.05
ABCA4P78363 Z83851.2-201ENST00000609564 659 ntBASIC15.38■□□□□ 0.05
ABCA4P78363 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
ABCA4P78363 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
ABCA4P78363 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
ABCA4P78363 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC15.38■□□□□ 0.05
ABCA4P78363 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC15.38■□□□□ 0.05
ABCA4P78363 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC15.38■□□□□ 0.05
ABCA4P78363 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
ABCA4P78363 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC15.38■□□□□ 0.05
ABCA4P78363 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
ABCA4P78363 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
ABCA4P78363 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC15.37■□□□□ 0.05
ABCA4P78363 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
ABCA4P78363 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
ABCA4P78363 COA5-202ENST00000409997 557 ntTSL 4 BASIC15.37■□□□□ 0.05
ABCA4P78363 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
ABCA4P78363 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC15.37■□□□□ 0.05
ABCA4P78363 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC15.37■□□□□ 0.05
ABCA4P78363 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC15.37■□□□□ 0.05
ABCA4P78363 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
ABCA4P78363 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
ABCA4P78363 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC15.37■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms