Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC14.68□□□□□ -0.06
LMO4P61968 AC145285.3-201ENST00000564603 959 ntBASIC14.68□□□□□ -0.06
LMO4P61968 RNF151-202ENST00000569210 853 ntTSL 2 BASIC14.68□□□□□ -0.06
LMO4P61968 PIN1-206ENST00000587625 878 ntTSL 2 BASIC14.68□□□□□ -0.06
LMO4P61968 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC14.68□□□□□ -0.06
LMO4P61968 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
LMO4P61968 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC14.68□□□□□ -0.06
LMO4P61968 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
LMO4P61968 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC14.68□□□□□ -0.06
LMO4P61968 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
LMO4P61968 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
LMO4P61968 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
LMO4P61968 ZNF259P1-201ENST00000407656 1365 ntBASIC14.68□□□□□ -0.06
LMO4P61968 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC14.68□□□□□ -0.06
LMO4P61968 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
LMO4P61968 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
LMO4P61968 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
LMO4P61968 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC14.68□□□□□ -0.06
LMO4P61968 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
LMO4P61968 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
LMO4P61968 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
LMO4P61968 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC14.68□□□□□ -0.06
LMO4P61968 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
LMO4P61968 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC14.68□□□□□ -0.06
LMO4P61968 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
LMO4P61968 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
LMO4P61968 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC14.67□□□□□ -0.06
LMO4P61968 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
LMO4P61968 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
LMO4P61968 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
LMO4P61968 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
LMO4P61968 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC14.67□□□□□ -0.06
LMO4P61968 AL138781.2-201ENST00000617896 1843 ntBASIC14.67□□□□□ -0.06
LMO4P61968 TNXA-203ENST00000507684 2038 ntBASIC14.67□□□□□ -0.06
LMO4P61968 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC14.67□□□□□ -0.06
LMO4P61968 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
LMO4P61968 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
LMO4P61968 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC14.67□□□□□ -0.06
LMO4P61968 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC14.67□□□□□ -0.06
LMO4P61968 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
LMO4P61968 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC14.67□□□□□ -0.06
LMO4P61968 PRYP5-201ENST00000451909 266 ntBASIC14.67□□□□□ -0.06
LMO4P61968 AC092910.1-201ENST00000482027 1129 ntBASIC14.67□□□□□ -0.06
LMO4P61968 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC14.67□□□□□ -0.06
LMO4P61968 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC14.67□□□□□ -0.06
LMO4P61968 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC14.67□□□□□ -0.06
LMO4P61968 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
LMO4P61968 AL022326.1-202ENST00000641533 845 ntBASIC14.67□□□□□ -0.06
LMO4P61968 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC14.67□□□□□ -0.06
LMO4P61968 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
LMO4P61968 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
LMO4P61968 MED29-202ENST00000594368 1471 ntTSL 2 BASIC14.67□□□□□ -0.06
LMO4P61968 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC14.67□□□□□ -0.06
LMO4P61968 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
LMO4P61968 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC14.67□□□□□ -0.06
LMO4P61968 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
LMO4P61968 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
LMO4P61968 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
LMO4P61968 SIGLEC16-201ENST00000599858 1437 ntBASIC14.66□□□□□ -0.06
LMO4P61968 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC14.66□□□□□ -0.06
LMO4P61968 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
LMO4P61968 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC14.66□□□□□ -0.06
LMO4P61968 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
LMO4P61968 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
LMO4P61968 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
LMO4P61968 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC14.66□□□□□ -0.06
LMO4P61968 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
LMO4P61968 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
LMO4P61968 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
LMO4P61968 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC14.66□□□□□ -0.06
LMO4P61968 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
LMO4P61968 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
LMO4P61968 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
LMO4P61968 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
LMO4P61968 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
LMO4P61968 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC14.66□□□□□ -0.06
LMO4P61968 AC098831.1-202ENST00000438821 336 ntBASIC14.66□□□□□ -0.06
LMO4P61968 AC105339.3-201ENST00000560043 636 ntBASIC14.66□□□□□ -0.06
LMO4P61968 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC14.66□□□□□ -0.06
LMO4P61968 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC14.66□□□□□ -0.06
LMO4P61968 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
LMO4P61968 GPALPP1-207ENST00000611650 899 ntBASIC14.66□□□□□ -0.06
LMO4P61968 AC006538.3-201ENST00000612495 578 ntBASIC14.66□□□□□ -0.06
LMO4P61968 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC14.66□□□□□ -0.06
LMO4P61968 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC14.66□□□□□ -0.06
LMO4P61968 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC14.66□□□□□ -0.06
LMO4P61968 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
LMO4P61968 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
LMO4P61968 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
LMO4P61968 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC14.66□□□□□ -0.06
LMO4P61968 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC14.66□□□□□ -0.06
LMO4P61968 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
LMO4P61968 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
LMO4P61968 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
LMO4P61968 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC14.66□□□□□ -0.06
LMO4P61968 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC14.66□□□□□ -0.06
LMO4P61968 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
LMO4P61968 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
LMO4P61968 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
LMO4P61968 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms