Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
COL4A4P53420 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
COL4A4P53420 SYS1-203ENST00000414310 795 ntTSL 3 BASIC19.06■□□□□ 0.64
COL4A4P53420 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC19.06■□□□□ 0.64
COL4A4P53420 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC19.06■□□□□ 0.64
COL4A4P53420 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC19.06■□□□□ 0.64
COL4A4P53420 MKNK2P1-201ENST00000437526 628 ntBASIC19.06■□□□□ 0.64
COL4A4P53420 KRT18P65-201ENST00000439811 1286 ntBASIC19.06■□□□□ 0.64
COL4A4P53420 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC19.06■□□□□ 0.64
COL4A4P53420 COX20P2-201ENST00000452636 358 ntBASIC19.06■□□□□ 0.64
COL4A4P53420 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
COL4A4P53420 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC19.06■□□□□ 0.64
COL4A4P53420 AP000344.2-201ENST00000512987 629 ntBASIC19.06■□□□□ 0.64
COL4A4P53420 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC19.06■□□□□ 0.64
COL4A4P53420 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
COL4A4P53420 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
COL4A4P53420 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC19.06■□□□□ 0.64
COL4A4P53420 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
COL4A4P53420 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
COL4A4P53420 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC19.06■□□□□ 0.64
COL4A4P53420 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
COL4A4P53420 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
COL4A4P53420 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC19.06■□□□□ 0.64
COL4A4P53420 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
COL4A4P53420 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC19.06■□□□□ 0.64
COL4A4P53420 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
COL4A4P53420 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC19.05■□□□□ 0.64
COL4A4P53420 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
COL4A4P53420 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
COL4A4P53420 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL4A4P53420 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
COL4A4P53420 CIPC-205ENST00000555437 566 ntTSL 3 BASIC19.05■□□□□ 0.64
COL4A4P53420 AP002472.1-201ENST00000577490 586 ntBASIC19.05■□□□□ 0.64
COL4A4P53420 MIR4751-201ENST00000578027 74 ntBASIC19.05■□□□□ 0.64
COL4A4P53420 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
COL4A4P53420 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC19.05■□□□□ 0.64
COL4A4P53420 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC19.05■□□□□ 0.64
COL4A4P53420 SIGLEC16-201ENST00000599858 1437 ntBASIC19.05■□□□□ 0.64
COL4A4P53420 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC19.05■□□□□ 0.64
COL4A4P53420 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL4A4P53420 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC19.05■□□□□ 0.64
COL4A4P53420 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL4A4P53420 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
COL4A4P53420 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL4A4P53420 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL4A4P53420 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
COL4A4P53420 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL4A4P53420 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL4A4P53420 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
COL4A4P53420 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL4A4P53420 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL4A4P53420 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
COL4A4P53420 SOD2-201ENST00000337404 991 ntTSL 2 BASIC19.05■□□□□ 0.64
COL4A4P53420 CD82-202ENST00000342935 967 ntTSL 5 BASIC19.05■□□□□ 0.64
COL4A4P53420 MIR770-201ENST00000390219 98 ntBASIC19.05■□□□□ 0.64
COL4A4P53420 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC19.05■□□□□ 0.64
COL4A4P53420 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC19.05■□□□□ 0.64
COL4A4P53420 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC19.05■□□□□ 0.64
COL4A4P53420 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC19.05■□□□□ 0.64
COL4A4P53420 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
COL4A4P53420 AC093028.1-201ENST00000622998 982 ntBASIC19.05■□□□□ 0.64
COL4A4P53420 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
COL4A4P53420 AC004408.2-201ENST00000623613 2777 ntBASIC19.04■□□□□ 0.64
COL4A4P53420 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL4A4P53420 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC19.04■□□□□ 0.64
COL4A4P53420 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
COL4A4P53420 GPR89P-201ENST00000407924 1495 ntBASIC19.04■□□□□ 0.64
COL4A4P53420 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL4A4P53420 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC19.04■□□□□ 0.64
COL4A4P53420 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL4A4P53420 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL4A4P53420 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL4A4P53420 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL4A4P53420 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
COL4A4P53420 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC19.04■□□□□ 0.64
COL4A4P53420 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL4A4P53420 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC19.04■□□□□ 0.64
COL4A4P53420 AC073592.4-201ENST00000623827 446 ntBASIC19.04■□□□□ 0.64
COL4A4P53420 C20orf181-201ENST00000623918 480 ntBASIC19.04■□□□□ 0.64
COL4A4P53420 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL4A4P53420 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL4A4P53420 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
COL4A4P53420 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL4A4P53420 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL4A4P53420 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC19.03■□□□□ 0.64
COL4A4P53420 AC087289.5-201ENST00000586076 3175 ntBASIC19.03■□□□□ 0.64
COL4A4P53420 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL4A4P53420 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL4A4P53420 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC19.03■□□□□ 0.64
COL4A4P53420 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL4A4P53420 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
COL4A4P53420 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL4A4P53420 CRYGEP-201ENST00000412192 528 ntBASIC19.03■□□□□ 0.64
COL4A4P53420 HLA-J-203ENST00000494367 1087 ntBASIC19.03■□□□□ 0.64
COL4A4P53420 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC19.03■□□□□ 0.64
COL4A4P53420 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC19.03■□□□□ 0.64
COL4A4P53420 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
COL4A4P53420 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
COL4A4P53420 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL4A4P53420 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms