Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SOX2P48431 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC15.82■□□□□ 0.12
SOX2P48431 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SOX2P48431 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
SOX2P48431 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
SOX2P48431 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
SOX2P48431 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SOX2P48431 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
SOX2P48431 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SOX2P48431 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
SOX2P48431 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC15.82■□□□□ 0.12
SOX2P48431 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC15.82■□□□□ 0.12
SOX2P48431 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
SOX2P48431 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
SOX2P48431 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC15.82■□□□□ 0.12
SOX2P48431 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
SOX2P48431 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC15.82■□□□□ 0.12
SOX2P48431 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC15.82■□□□□ 0.12
SOX2P48431 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC15.82■□□□□ 0.12
SOX2P48431 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
SOX2P48431 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SOX2P48431 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC15.82■□□□□ 0.12
SOX2P48431 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
SOX2P48431 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
SOX2P48431 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
SOX2P48431 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SOX2P48431 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
SOX2P48431 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC15.81■□□□□ 0.12
SOX2P48431 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC15.81■□□□□ 0.12
SOX2P48431 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
SOX2P48431 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
SOX2P48431 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
SOX2P48431 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SOX2P48431 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SOX2P48431 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SOX2P48431 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
SOX2P48431 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC15.81■□□□□ 0.12
SOX2P48431 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
SOX2P48431 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC15.81■□□□□ 0.12
SOX2P48431 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SOX2P48431 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
SOX2P48431 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SOX2P48431 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
SOX2P48431 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
SOX2P48431 CA15P1-201ENST00000481698 905 ntBASIC15.81■□□□□ 0.12
SOX2P48431 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC15.81■□□□□ 0.12
SOX2P48431 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
SOX2P48431 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC15.81■□□□□ 0.12
SOX2P48431 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SOX2P48431 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC15.81■□□□□ 0.12
SOX2P48431 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
SOX2P48431 AC022211.2-201ENST00000585075 2527 ntBASIC15.81■□□□□ 0.12
SOX2P48431 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC15.81■□□□□ 0.12
SOX2P48431 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
SOX2P48431 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
SOX2P48431 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SOX2P48431 AL359736.2-201ENST00000621992 437 ntBASIC15.81■□□□□ 0.12
SOX2P48431 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC15.81■□□□□ 0.12
SOX2P48431 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SOX2P48431 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC15.8■□□□□ 0.12
SOX2P48431 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC15.8■□□□□ 0.12
SOX2P48431 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC15.8■□□□□ 0.12
SOX2P48431 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
SOX2P48431 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
SOX2P48431 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
SOX2P48431 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
SOX2P48431 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
SOX2P48431 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SOX2P48431 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC15.8■□□□□ 0.12
SOX2P48431 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
SOX2P48431 HOXB1-202ENST00000577092 1414 ntBASIC15.8■□□□□ 0.12
SOX2P48431 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SOX2P48431 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SOX2P48431 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SOX2P48431 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
SOX2P48431 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SOX2P48431 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
SOX2P48431 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
SOX2P48431 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC15.8■□□□□ 0.12
SOX2P48431 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
SOX2P48431 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
SOX2P48431 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC15.8■□□□□ 0.12
SOX2P48431 AC116562.2-201ENST00000507042 360 ntBASIC15.8■□□□□ 0.12
SOX2P48431 NUDT16P1-203ENST00000513809 620 ntBASIC15.8■□□□□ 0.12
SOX2P48431 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC15.8■□□□□ 0.12
SOX2P48431 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
SOX2P48431 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SOX2P48431 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
SOX2P48431 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SOX2P48431 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SOX2P48431 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
SOX2P48431 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
SOX2P48431 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SOX2P48431 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC15.79■□□□□ 0.12
SOX2P48431 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
SOX2P48431 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
SOX2P48431 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SOX2P48431 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SOX2P48431 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
SOX2P48431 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms