Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC23.5■■□□□ 1.35
COL18A1P39060 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC23.5■■□□□ 1.35
COL18A1P39060 CD63-210ENST00000550776 870 ntTSL 5 BASIC23.5■■□□□ 1.35
COL18A1P39060 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC23.5■■□□□ 1.35
COL18A1P39060 AC109462.3-201ENST00000573934 613 ntBASIC23.5■■□□□ 1.35
COL18A1P39060 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC23.5■■□□□ 1.35
COL18A1P39060 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC23.5■■□□□ 1.35
COL18A1P39060 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC23.5■■□□□ 1.35
COL18A1P39060 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
COL18A1P39060 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
COL18A1P39060 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC23.49■■□□□ 1.35
COL18A1P39060 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
COL18A1P39060 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC23.49■■□□□ 1.35
COL18A1P39060 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
COL18A1P39060 AP002414.1-201ENST00000391405 1147 ntBASIC23.49■■□□□ 1.35
COL18A1P39060 CEND1P1-201ENST00000451006 455 ntBASIC23.49■■□□□ 1.35
COL18A1P39060 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC23.49■■□□□ 1.35
COL18A1P39060 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC23.49■■□□□ 1.35
COL18A1P39060 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC23.49■■□□□ 1.35
COL18A1P39060 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC23.49■■□□□ 1.35
COL18A1P39060 RNF34-208ENST00000555076 593 ntTSL 3 BASIC23.49■■□□□ 1.35
COL18A1P39060 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC23.49■■□□□ 1.35
COL18A1P39060 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC23.49■■□□□ 1.35
COL18A1P39060 AC092902.6-201ENST00000641783 218 ntBASIC23.49■■□□□ 1.35
COL18A1P39060 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC23.49■■□□□ 1.35
COL18A1P39060 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
COL18A1P39060 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
COL18A1P39060 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
COL18A1P39060 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC23.48■■□□□ 1.35
COL18A1P39060 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC23.48■■□□□ 1.35
COL18A1P39060 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
COL18A1P39060 AC073130.3-201ENST00000624389 2278 ntBASIC23.48■■□□□ 1.35
COL18A1P39060 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC23.48■■□□□ 1.35
COL18A1P39060 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
COL18A1P39060 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC23.48■■□□□ 1.35
COL18A1P39060 STK25P1-201ENST00000585406 838 ntBASIC23.48■■□□□ 1.35
COL18A1P39060 AL353135.1-201ENST00000606729 504 ntBASIC23.48■■□□□ 1.35
COL18A1P39060 AC093028.1-201ENST00000622998 982 ntBASIC23.48■■□□□ 1.35
COL18A1P39060 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC23.48■■□□□ 1.35
COL18A1P39060 AC009336.1-201ENST00000608941 1553 ntBASIC23.48■■□□□ 1.35
COL18A1P39060 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC23.48■■□□□ 1.35
COL18A1P39060 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC23.48■■□□□ 1.35
COL18A1P39060 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC23.48■■□□□ 1.35
COL18A1P39060 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC23.48■■□□□ 1.35
COL18A1P39060 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC23.48■■□□□ 1.35
COL18A1P39060 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC23.48■■□□□ 1.35
COL18A1P39060 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
COL18A1P39060 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
COL18A1P39060 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC23.47■■□□□ 1.35
COL18A1P39060 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC23.47■■□□□ 1.35
COL18A1P39060 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC23.47■■□□□ 1.35
COL18A1P39060 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC23.47■■□□□ 1.35
COL18A1P39060 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC23.47■■□□□ 1.35
COL18A1P39060 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC23.47■■□□□ 1.35
COL18A1P39060 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC23.47■■□□□ 1.35
COL18A1P39060 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
COL18A1P39060 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
COL18A1P39060 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC23.47■■□□□ 1.35
COL18A1P39060 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
COL18A1P39060 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
COL18A1P39060 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC23.47■■□□□ 1.35
COL18A1P39060 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
COL18A1P39060 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC23.47■■□□□ 1.35
COL18A1P39060 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC23.47■■□□□ 1.35
COL18A1P39060 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC23.47■■□□□ 1.35
COL18A1P39060 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC23.47■■□□□ 1.35
COL18A1P39060 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC23.47■■□□□ 1.35
COL18A1P39060 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
COL18A1P39060 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC23.47■■□□□ 1.35
COL18A1P39060 METTL23-205ENST00000588302 925 ntTSL 5 BASIC23.47■■□□□ 1.35
COL18A1P39060 AQP6-205ENST00000618286 829 ntTSL 5 BASIC23.47■■□□□ 1.35
COL18A1P39060 AC091812.2-201ENST00000619081 385 ntBASIC23.47■■□□□ 1.35
COL18A1P39060 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC23.47■■□□□ 1.35
COL18A1P39060 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC23.47■■□□□ 1.35
COL18A1P39060 AC073592.3-201ENST00000625118 1834 ntBASIC23.47■■□□□ 1.35
COL18A1P39060 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
COL18A1P39060 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC23.46■■□□□ 1.35
COL18A1P39060 AC100803.2-201ENST00000562459 1963 ntBASIC23.46■■□□□ 1.35
COL18A1P39060 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC23.46■■□□□ 1.35
COL18A1P39060 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
COL18A1P39060 HARS-201ENST00000307633 1780 ntTSL 2 BASIC23.46■■□□□ 1.35
COL18A1P39060 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC23.46■■□□□ 1.35
COL18A1P39060 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC23.46■■□□□ 1.35
COL18A1P39060 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC23.46■■□□□ 1.35
COL18A1P39060 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC23.46■■□□□ 1.35
COL18A1P39060 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC23.46■■□□□ 1.35
COL18A1P39060 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC23.46■■□□□ 1.35
COL18A1P39060 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC23.46■■□□□ 1.35
COL18A1P39060 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
COL18A1P39060 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
COL18A1P39060 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
COL18A1P39060 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC23.46■■□□□ 1.35
COL18A1P39060 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC23.46■■□□□ 1.35
COL18A1P39060 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC23.46■■□□□ 1.35
COL18A1P39060 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC23.46■■□□□ 1.35
COL18A1P39060 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC23.46■■□□□ 1.35
COL18A1P39060 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
COL18A1P39060 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.35
COL18A1P39060 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.35
COL18A1P39060 SIGLEC30P-201ENST00000455569 941 ntBASIC23.45■■□□□ 1.34
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms