Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SHMT2P34897 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SHMT2P34897 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SHMT2P34897 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SHMT2P34897 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SHMT2P34897 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
SHMT2P34897 AC106820.2-201ENST00000563775 3264 ntBASIC17.57■□□□□ 0.4
SHMT2P34897 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC17.57■□□□□ 0.4
SHMT2P34897 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SHMT2P34897 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
SHMT2P34897 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SHMT2P34897 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
SHMT2P34897 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
SHMT2P34897 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC17.56■□□□□ 0.4
SHMT2P34897 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SHMT2P34897 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
SHMT2P34897 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC17.56■□□□□ 0.4
SHMT2P34897 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC17.56■□□□□ 0.4
SHMT2P34897 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC17.56■□□□□ 0.4
SHMT2P34897 ATP5G2P1-201ENST00000433580 426 ntBASIC17.56■□□□□ 0.4
SHMT2P34897 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
SHMT2P34897 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC17.56■□□□□ 0.4
SHMT2P34897 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC17.56■□□□□ 0.4
SHMT2P34897 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC17.56■□□□□ 0.4
SHMT2P34897 BCL10-202ENST00000620248 774 ntTSL 5 BASIC17.56■□□□□ 0.4
SHMT2P34897 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC17.56■□□□□ 0.4
SHMT2P34897 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SHMT2P34897 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
SHMT2P34897 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC17.56■□□□□ 0.4
SHMT2P34897 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SHMT2P34897 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SHMT2P34897 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
SHMT2P34897 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
SHMT2P34897 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SHMT2P34897 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SHMT2P34897 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC17.55■□□□□ 0.4
SHMT2P34897 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SHMT2P34897 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC17.55■□□□□ 0.4
SHMT2P34897 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC17.55■□□□□ 0.4
SHMT2P34897 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
SHMT2P34897 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
SHMT2P34897 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SHMT2P34897 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
SHMT2P34897 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC17.55■□□□□ 0.4
SHMT2P34897 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
SHMT2P34897 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
SHMT2P34897 TSPY12P-201ENST00000421279 868 ntBASIC17.55■□□□□ 0.4
SHMT2P34897 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SHMT2P34897 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SHMT2P34897 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC17.55■□□□□ 0.4
SHMT2P34897 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC17.55■□□□□ 0.4
SHMT2P34897 IGHV3-41-201ENST00000613121 348 ntBASIC17.55■□□□□ 0.4
SHMT2P34897 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
SHMT2P34897 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC17.55■□□□□ 0.4
SHMT2P34897 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC17.55■□□□□ 0.4
SHMT2P34897 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SHMT2P34897 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SHMT2P34897 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SHMT2P34897 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SHMT2P34897 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
SHMT2P34897 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SHMT2P34897 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
SHMT2P34897 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC17.55■□□□□ 0.4
SHMT2P34897 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SHMT2P34897 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SHMT2P34897 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
SHMT2P34897 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SHMT2P34897 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC17.55■□□□□ 0.4
SHMT2P34897 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
SHMT2P34897 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SHMT2P34897 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC17.54■□□□□ 0.4
SHMT2P34897 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC17.54■□□□□ 0.4
SHMT2P34897 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
SHMT2P34897 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SHMT2P34897 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SHMT2P34897 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC17.54■□□□□ 0.4
SHMT2P34897 FST-202ENST00000396947 2538 ntTSL 5 BASIC17.54■□□□□ 0.4
SHMT2P34897 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SHMT2P34897 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SHMT2P34897 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SHMT2P34897 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC17.54■□□□□ 0.4
SHMT2P34897 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC17.54■□□□□ 0.4
SHMT2P34897 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SHMT2P34897 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC17.54■□□□□ 0.4
SHMT2P34897 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SHMT2P34897 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC17.54■□□□□ 0.4
SHMT2P34897 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SHMT2P34897 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC17.54■□□□□ 0.4
SHMT2P34897 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC17.54■□□□□ 0.4
SHMT2P34897 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC17.54■□□□□ 0.4
SHMT2P34897 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
SHMT2P34897 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SHMT2P34897 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SHMT2P34897 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
SHMT2P34897 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
SHMT2P34897 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
SHMT2P34897 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SHMT2P34897 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
SHMT2P34897 LINC00602-201ENST00000629776 2065 ntBASIC17.54■□□□□ 0.4
SHMT2P34897 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms