Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 AL645608.8-201ENST00000606034 2086 ntBASIC13.7□□□□□ -0.22
HLA-DMBP28068 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC13.7□□□□□ -0.22
HLA-DMBP28068 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
HLA-DMBP28068 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
HLA-DMBP28068 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
HLA-DMBP28068 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC13.69□□□□□ -0.22
HLA-DMBP28068 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
HLA-DMBP28068 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC13.69□□□□□ -0.22
HLA-DMBP28068 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
HLA-DMBP28068 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC13.69□□□□□ -0.22
HLA-DMBP28068 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC13.69□□□□□ -0.22
HLA-DMBP28068 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
HLA-DMBP28068 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
HLA-DMBP28068 AC080080.1-201ENST00000625121 2420 ntBASIC13.69□□□□□ -0.22
HLA-DMBP28068 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC13.69□□□□□ -0.22
HLA-DMBP28068 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
HLA-DMBP28068 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC13.69□□□□□ -0.22
HLA-DMBP28068 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
HLA-DMBP28068 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC13.69□□□□□ -0.22
HLA-DMBP28068 LIN28AP1-201ENST00000429574 405 ntBASIC13.69□□□□□ -0.22
HLA-DMBP28068 SLC25A3P1-201ENST00000443844 931 ntBASIC13.69□□□□□ -0.22
HLA-DMBP28068 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC13.69□□□□□ -0.22
HLA-DMBP28068 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC13.69□□□□□ -0.22
HLA-DMBP28068 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC13.69□□□□□ -0.22
HLA-DMBP28068 AC024243.1-201ENST00000609234 778 ntBASIC13.69□□□□□ -0.22
HLA-DMBP28068 AC092865.7-201ENST00000641832 219 ntBASIC13.69□□□□□ -0.22
HLA-DMBP28068 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
HLA-DMBP28068 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
HLA-DMBP28068 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
HLA-DMBP28068 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
HLA-DMBP28068 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
HLA-DMBP28068 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC13.69□□□□□ -0.22
HLA-DMBP28068 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC13.69□□□□□ -0.22
HLA-DMBP28068 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
HLA-DMBP28068 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
HLA-DMBP28068 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
HLA-DMBP28068 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
HLA-DMBP28068 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC13.69□□□□□ -0.22
HLA-DMBP28068 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
HLA-DMBP28068 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
HLA-DMBP28068 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC13.69□□□□□ -0.22
HLA-DMBP28068 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
HLA-DMBP28068 AC100803.2-201ENST00000562459 1963 ntBASIC13.69□□□□□ -0.22
HLA-DMBP28068 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
HLA-DMBP28068 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HLA-DMBP28068 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HLA-DMBP28068 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HLA-DMBP28068 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
HLA-DMBP28068 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
HLA-DMBP28068 AC141586.5-201ENST00000624546 2050 ntBASIC13.68□□□□□ -0.22
HLA-DMBP28068 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
HLA-DMBP28068 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC13.68□□□□□ -0.22
HLA-DMBP28068 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HLA-DMBP28068 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
HLA-DMBP28068 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC13.68□□□□□ -0.22
HLA-DMBP28068 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC13.68□□□□□ -0.22
HLA-DMBP28068 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HLA-DMBP28068 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
HLA-DMBP28068 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HLA-DMBP28068 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HLA-DMBP28068 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HLA-DMBP28068 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HLA-DMBP28068 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HLA-DMBP28068 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC13.68□□□□□ -0.22
HLA-DMBP28068 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC13.68□□□□□ -0.22
HLA-DMBP28068 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
HLA-DMBP28068 TSPY14P-201ENST00000303979 915 ntBASIC13.68□□□□□ -0.22
HLA-DMBP28068 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC13.68□□□□□ -0.22
HLA-DMBP28068 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HLA-DMBP28068 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
HLA-DMBP28068 PHB2-202ENST00000440277 996 ntTSL 5 BASIC13.68□□□□□ -0.22
HLA-DMBP28068 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HLA-DMBP28068 KRT18P57-201ENST00000443599 1254 ntBASIC13.68□□□□□ -0.22
HLA-DMBP28068 AC009947.2-201ENST00000444014 672 ntBASIC13.68□□□□□ -0.22
HLA-DMBP28068 ATP5G1P1-201ENST00000448724 379 ntBASIC13.68□□□□□ -0.22
HLA-DMBP28068 ECEL1P2-202ENST00000465689 757 ntBASIC13.68□□□□□ -0.22
HLA-DMBP28068 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC13.68□□□□□ -0.22
HLA-DMBP28068 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
HLA-DMBP28068 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC13.68□□□□□ -0.22
HLA-DMBP28068 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC13.68□□□□□ -0.22
HLA-DMBP28068 P4HB-223ENST00000576390 439 ntTSL 4 BASIC13.68□□□□□ -0.22
HLA-DMBP28068 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
HLA-DMBP28068 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
HLA-DMBP28068 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
HLA-DMBP28068 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
HLA-DMBP28068 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HLA-DMBP28068 KRT18P55-202ENST00000578578 1546 ntBASIC13.68□□□□□ -0.22
HLA-DMBP28068 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
HLA-DMBP28068 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
HLA-DMBP28068 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC13.68□□□□□ -0.22
HLA-DMBP28068 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC13.68□□□□□ -0.22
HLA-DMBP28068 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
HLA-DMBP28068 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC13.68□□□□□ -0.22
HLA-DMBP28068 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC13.68□□□□□ -0.22
HLA-DMBP28068 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
HLA-DMBP28068 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
HLA-DMBP28068 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
HLA-DMBP28068 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC13.67□□□□□ -0.22
HLA-DMBP28068 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC13.67□□□□□ -0.22
HLA-DMBP28068 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 52.7 ms