Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC22.44■■□□□ 1.18
COL5A3P25940 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
COL5A3P25940 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC22.44■■□□□ 1.18
COL5A3P25940 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
COL5A3P25940 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC22.44■■□□□ 1.18
COL5A3P25940 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC22.44■■□□□ 1.18
COL5A3P25940 CFL1-212ENST00000531413 636 ntTSL 3 BASIC22.44■■□□□ 1.18
COL5A3P25940 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
COL5A3P25940 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
COL5A3P25940 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC22.44■■□□□ 1.18
COL5A3P25940 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
COL5A3P25940 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
COL5A3P25940 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC22.44■■□□□ 1.18
COL5A3P25940 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC22.44■■□□□ 1.18
COL5A3P25940 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC22.44■■□□□ 1.18
COL5A3P25940 AL139400.1-201ENST00000366220 510 ntBASIC22.43■■□□□ 1.18
COL5A3P25940 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC22.43■■□□□ 1.18
COL5A3P25940 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC22.43■■□□□ 1.18
COL5A3P25940 DUTP2-201ENST00000519164 463 ntBASIC22.43■■□□□ 1.18
COL5A3P25940 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC22.43■■□□□ 1.18
COL5A3P25940 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC22.43■■□□□ 1.18
COL5A3P25940 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC22.43■■□□□ 1.18
COL5A3P25940 AC011467.4-201ENST00000594891 528 ntBASIC22.43■■□□□ 1.18
COL5A3P25940 AC093028.1-201ENST00000622998 982 ntBASIC22.43■■□□□ 1.18
COL5A3P25940 AC004877.2-201ENST00000623941 599 ntBASIC22.43■■□□□ 1.18
COL5A3P25940 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
COL5A3P25940 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
COL5A3P25940 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC22.43■■□□□ 1.18
COL5A3P25940 AC073592.3-201ENST00000625118 1834 ntBASIC22.43■■□□□ 1.18
COL5A3P25940 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
COL5A3P25940 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
COL5A3P25940 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC22.43■■□□□ 1.18
COL5A3P25940 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
COL5A3P25940 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
COL5A3P25940 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC22.43■■□□□ 1.18
COL5A3P25940 ACTG1P4-201ENST00000425123 1122 ntBASIC22.43■■□□□ 1.18
COL5A3P25940 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC22.43■■□□□ 1.18
COL5A3P25940 CEND1P1-201ENST00000451006 455 ntBASIC22.43■■□□□ 1.18
COL5A3P25940 STK19B-204ENST00000512515 211 ntBASIC22.43■■□□□ 1.18
COL5A3P25940 RNF34-208ENST00000555076 593 ntTSL 3 BASIC22.43■■□□□ 1.18
COL5A3P25940 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC22.43■■□□□ 1.18
COL5A3P25940 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC22.43■■□□□ 1.18
COL5A3P25940 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC22.43■■□□□ 1.18
COL5A3P25940 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC22.42■■□□□ 1.18
COL5A3P25940 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
COL5A3P25940 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC22.42■■□□□ 1.18
COL5A3P25940 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
COL5A3P25940 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
COL5A3P25940 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC22.42■■□□□ 1.18
COL5A3P25940 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC22.42■■□□□ 1.18
COL5A3P25940 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC22.42■■□□□ 1.18
COL5A3P25940 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC22.42■■□□□ 1.18
COL5A3P25940 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC22.42■■□□□ 1.18
COL5A3P25940 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC22.42■■□□□ 1.18
COL5A3P25940 STK25P1-201ENST00000585406 838 ntBASIC22.42■■□□□ 1.18
COL5A3P25940 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
COL5A3P25940 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC22.42■■□□□ 1.18
COL5A3P25940 AC100803.2-201ENST00000562459 1963 ntBASIC22.42■■□□□ 1.18
COL5A3P25940 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC22.42■■□□□ 1.18
COL5A3P25940 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
COL5A3P25940 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC22.42■■□□□ 1.18
COL5A3P25940 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC22.42■■□□□ 1.18
COL5A3P25940 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
COL5A3P25940 PC-208ENST00000529047 1607 ntTSL 3 BASIC22.41■■□□□ 1.18
COL5A3P25940 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC22.41■■□□□ 1.18
COL5A3P25940 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC22.41■■□□□ 1.18
COL5A3P25940 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC22.41■■□□□ 1.18
COL5A3P25940 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
COL5A3P25940 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
COL5A3P25940 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC22.41■■□□□ 1.18
COL5A3P25940 DDX43P3-201ENST00000441064 443 ntBASIC22.41■■□□□ 1.18
COL5A3P25940 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC22.41■■□□□ 1.18
COL5A3P25940 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC22.41■■□□□ 1.18
COL5A3P25940 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC22.41■■□□□ 1.18
COL5A3P25940 AC106028.4-201ENST00000614509 607 ntBASIC22.41■■□□□ 1.18
COL5A3P25940 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC22.41■■□□□ 1.18
COL5A3P25940 AC092902.6-201ENST00000641783 218 ntBASIC22.41■■□□□ 1.18
COL5A3P25940 AC073130.3-201ENST00000624389 2278 ntBASIC22.41■■□□□ 1.18
COL5A3P25940 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
COL5A3P25940 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
COL5A3P25940 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
COL5A3P25940 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
COL5A3P25940 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
COL5A3P25940 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC22.4■■□□□ 1.18
COL5A3P25940 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
COL5A3P25940 FAM58CP-201ENST00000435741 640 ntBASIC22.4■■□□□ 1.18
COL5A3P25940 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC22.4■■□□□ 1.18
COL5A3P25940 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC22.4■■□□□ 1.18
COL5A3P25940 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC22.4■■□□□ 1.18
COL5A3P25940 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC22.4■■□□□ 1.18
COL5A3P25940 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC22.4■■□□□ 1.18
COL5A3P25940 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC22.4■■□□□ 1.18
COL5A3P25940 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC22.4■■□□□ 1.18
COL5A3P25940 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
COL5A3P25940 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
COL5A3P25940 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC22.4■■□□□ 1.18
COL5A3P25940 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC22.4■■□□□ 1.18
COL5A3P25940 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC22.4■■□□□ 1.18
COL5A3P25940 SIGLEC30P-201ENST00000455569 941 ntBASIC22.4■■□□□ 1.18
COL5A3P25940 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC22.4■■□□□ 1.18
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms