Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
BDNFP23560 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC18.88■□□□□ 0.61
BDNFP23560 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC18.88■□□□□ 0.61
BDNFP23560 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC18.88■□□□□ 0.61
BDNFP23560 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
BDNFP23560 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
BDNFP23560 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
BDNFP23560 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
BDNFP23560 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
BDNFP23560 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC18.88■□□□□ 0.61
BDNFP23560 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC18.88■□□□□ 0.61
BDNFP23560 DANCR-204ENST00000444958 709 ntTSL 3 BASIC18.88■□□□□ 0.61
BDNFP23560 FAAHP1-202ENST00000446499 1238 ntBASIC18.88■□□□□ 0.61
BDNFP23560 AC079781.3-201ENST00000449110 356 ntBASIC18.88■□□□□ 0.61
BDNFP23560 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
BDNFP23560 AC132008.2-207ENST00000454517 770 ntBASIC18.88■□□□□ 0.61
BDNFP23560 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC18.88■□□□□ 0.61
BDNFP23560 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC18.88■□□□□ 0.61
BDNFP23560 BMF-207ENST00000559701 630 ntTSL 3 BASIC18.88■□□□□ 0.61
BDNFP23560 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC18.88■□□□□ 0.61
BDNFP23560 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC18.88■□□□□ 0.61
BDNFP23560 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
BDNFP23560 AC011467.2-201ENST00000598425 242 ntBASIC18.88■□□□□ 0.61
BDNFP23560 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC18.88■□□□□ 0.61
BDNFP23560 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC18.88■□□□□ 0.61
BDNFP23560 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC18.88■□□□□ 0.61
BDNFP23560 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
BDNFP23560 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
BDNFP23560 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
BDNFP23560 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC18.88■□□□□ 0.61
BDNFP23560 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
BDNFP23560 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC18.88■□□□□ 0.61
BDNFP23560 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC18.88■□□□□ 0.61
BDNFP23560 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC18.88■□□□□ 0.61
BDNFP23560 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
BDNFP23560 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC18.88■□□□□ 0.61
BDNFP23560 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
BDNFP23560 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
BDNFP23560 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
BDNFP23560 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
BDNFP23560 AP000997.3-201ENST00000623333 2250 ntBASIC18.88■□□□□ 0.61
BDNFP23560 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC18.88■□□□□ 0.61
BDNFP23560 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC18.88■□□□□ 0.61
BDNFP23560 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC18.88■□□□□ 0.61
BDNFP23560 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC18.88■□□□□ 0.61
BDNFP23560 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC18.88■□□□□ 0.61
BDNFP23560 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
BDNFP23560 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC18.87■□□□□ 0.61
BDNFP23560 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
BDNFP23560 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
BDNFP23560 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
BDNFP23560 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
BDNFP23560 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
BDNFP23560 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
BDNFP23560 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
BDNFP23560 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
BDNFP23560 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
BDNFP23560 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
BDNFP23560 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
BDNFP23560 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
BDNFP23560 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
BDNFP23560 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC18.87■□□□□ 0.61
BDNFP23560 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
BDNFP23560 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC18.87■□□□□ 0.61
BDNFP23560 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
BDNFP23560 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC18.87■□□□□ 0.61
BDNFP23560 INTS4P1-201ENST00000438455 1935 ntBASIC18.87■□□□□ 0.61
BDNFP23560 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC18.87■□□□□ 0.61
BDNFP23560 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
BDNFP23560 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC18.87■□□□□ 0.61
BDNFP23560 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
BDNFP23560 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC18.87■□□□□ 0.61
BDNFP23560 TBC1D3P5-201ENST00000579401 1545 ntBASIC18.87■□□□□ 0.61
BDNFP23560 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC18.87■□□□□ 0.61
BDNFP23560 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC18.87■□□□□ 0.61
BDNFP23560 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC18.87■□□□□ 0.61
BDNFP23560 AL031008.1-201ENST00000619963 541 ntBASIC18.87■□□□□ 0.61
BDNFP23560 REXO1L6P-202ENST00000619970 1078 ntBASIC18.87■□□□□ 0.61
BDNFP23560 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC18.87■□□□□ 0.61
BDNFP23560 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC18.87■□□□□ 0.61
BDNFP23560 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
BDNFP23560 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
BDNFP23560 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
BDNFP23560 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
BDNFP23560 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC18.87■□□□□ 0.61
BDNFP23560 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC18.86■□□□□ 0.61
BDNFP23560 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
BDNFP23560 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC18.86■□□□□ 0.61
BDNFP23560 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
BDNFP23560 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC18.86■□□□□ 0.61
BDNFP23560 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC18.86■□□□□ 0.61
BDNFP23560 AC100803.2-201ENST00000562459 1963 ntBASIC18.86■□□□□ 0.61
BDNFP23560 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
BDNFP23560 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
BDNFP23560 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
BDNFP23560 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
BDNFP23560 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
BDNFP23560 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
BDNFP23560 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
BDNFP23560 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 72 ms