Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC13.53□□□□□ -0.24
HLA-DQA1P01909 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
HLA-DQA1P01909 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC13.53□□□□□ -0.24
HLA-DQA1P01909 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
HLA-DQA1P01909 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.24
HLA-DQA1P01909 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
HLA-DQA1P01909 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
HLA-DQA1P01909 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
HLA-DQA1P01909 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
HLA-DQA1P01909 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
HLA-DQA1P01909 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
HLA-DQA1P01909 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC13.52□□□□□ -0.24
HLA-DQA1P01909 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
HLA-DQA1P01909 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.24
HLA-DQA1P01909 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
HLA-DQA1P01909 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
HLA-DQA1P01909 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC13.52□□□□□ -0.24
HLA-DQA1P01909 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.24
HLA-DQA1P01909 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
HLA-DQA1P01909 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC13.52□□□□□ -0.24
HLA-DQA1P01909 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC13.52□□□□□ -0.24
HLA-DQA1P01909 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
HLA-DQA1P01909 PGR-209ENST00000617858 2816 ntTSL 5 BASIC13.52□□□□□ -0.24
HLA-DQA1P01909 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
HLA-DQA1P01909 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
HLA-DQA1P01909 AC008741.2-201ENST00000612792 3115 ntBASIC13.52□□□□□ -0.24
HLA-DQA1P01909 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
HLA-DQA1P01909 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.25
HLA-DQA1P01909 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.25
HLA-DQA1P01909 LSM12P1-201ENST00000411836 588 ntBASIC13.52□□□□□ -0.25
HLA-DQA1P01909 AL390719.1-204ENST00000412397 1219 ntBASIC13.52□□□□□ -0.25
HLA-DQA1P01909 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC13.52□□□□□ -0.25
HLA-DQA1P01909 SERPINH1P1-201ENST00000419794 1249 ntBASIC13.52□□□□□ -0.25
HLA-DQA1P01909 TUBB8P6-201ENST00000436895 1288 ntBASIC13.52□□□□□ -0.25
HLA-DQA1P01909 SERP1-205ENST00000487153 657 ntTSL 4 BASIC13.52□□□□□ -0.25
HLA-DQA1P01909 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.25
HLA-DQA1P01909 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC13.52□□□□□ -0.25
HLA-DQA1P01909 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC13.52□□□□□ -0.25
HLA-DQA1P01909 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
HLA-DQA1P01909 AC010980.2-201ENST00000587099 1412 ntBASIC13.52□□□□□ -0.25
HLA-DQA1P01909 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.25
HLA-DQA1P01909 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC13.52□□□□□ -0.25
HLA-DQA1P01909 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.25
HLA-DQA1P01909 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC13.52□□□□□ -0.25
HLA-DQA1P01909 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC13.52□□□□□ -0.25
HLA-DQA1P01909 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
HLA-DQA1P01909 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.25
HLA-DQA1P01909 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC13.52□□□□□ -0.25
HLA-DQA1P01909 AL603756.1-201ENST00000606511 2163 ntBASIC13.52□□□□□ -0.25
HLA-DQA1P01909 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
HLA-DQA1P01909 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC13.52□□□□□ -0.25
HLA-DQA1P01909 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
HLA-DQA1P01909 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
HLA-DQA1P01909 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
HLA-DQA1P01909 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.25
HLA-DQA1P01909 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
HLA-DQA1P01909 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
HLA-DQA1P01909 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.25
HLA-DQA1P01909 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.25
HLA-DQA1P01909 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC13.51□□□□□ -0.25
HLA-DQA1P01909 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
HLA-DQA1P01909 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
HLA-DQA1P01909 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
HLA-DQA1P01909 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC13.51□□□□□ -0.25
HLA-DQA1P01909 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC13.51□□□□□ -0.25
HLA-DQA1P01909 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
HLA-DQA1P01909 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
HLA-DQA1P01909 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC13.51□□□□□ -0.25
HLA-DQA1P01909 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
HLA-DQA1P01909 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC13.51□□□□□ -0.25
HLA-DQA1P01909 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
HLA-DQA1P01909 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
HLA-DQA1P01909 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
HLA-DQA1P01909 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
HLA-DQA1P01909 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
HLA-DQA1P01909 SLC29A4P1-201ENST00000398760 971 ntBASIC13.51□□□□□ -0.25
HLA-DQA1P01909 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC13.51□□□□□ -0.25
HLA-DQA1P01909 KRT18P16-201ENST00000510337 1294 ntBASIC13.51□□□□□ -0.25
HLA-DQA1P01909 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC13.51□□□□□ -0.25
HLA-DQA1P01909 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
HLA-DQA1P01909 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC13.51□□□□□ -0.25
HLA-DQA1P01909 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC13.51□□□□□ -0.25
HLA-DQA1P01909 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC13.51□□□□□ -0.25
HLA-DQA1P01909 WT1-AS_3.1-201ENST00000613262 234 ntBASIC13.51□□□□□ -0.25
HLA-DQA1P01909 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
HLA-DQA1P01909 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
HLA-DQA1P01909 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC13.51□□□□□ -0.25
HLA-DQA1P01909 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
HLA-DQA1P01909 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
HLA-DQA1P01909 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC13.51□□□□□ -0.25
HLA-DQA1P01909 GCK-209ENST00000616242 2260 ntTSL 5 BASIC13.51□□□□□ -0.25
HLA-DQA1P01909 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
HLA-DQA1P01909 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
HLA-DQA1P01909 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
HLA-DQA1P01909 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC13.51□□□□□ -0.25
HLA-DQA1P01909 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC13.51□□□□□ -0.25
HLA-DQA1P01909 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
HLA-DQA1P01909 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
HLA-DQA1P01909 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
HLA-DQA1P01909 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms