Protein–RNA interactions for Protein: O76039

CDKL5, Cyclin-dependent kinase-like 5, humanhuman

Predictions only

Length 1,030 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5O76039 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
CDKL5O76039 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
CDKL5O76039 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CDKL5O76039 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
CDKL5O76039 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC20.88■□□□□ 0.93
CDKL5O76039 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CDKL5O76039 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC20.88■□□□□ 0.93
CDKL5O76039 BAALC-202ENST00000306391 243 ntTSL 5 BASIC20.88■□□□□ 0.93
CDKL5O76039 BAALC-204ENST00000330955 222 ntTSL 5 BASIC20.88■□□□□ 0.93
CDKL5O76039 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC20.88■□□□□ 0.93
CDKL5O76039 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC20.88■□□□□ 0.93
CDKL5O76039 AC005332.3-201ENST00000589904 676 ntBASIC20.88■□□□□ 0.93
CDKL5O76039 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC20.88■□□□□ 0.93
CDKL5O76039 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CDKL5O76039 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CDKL5O76039 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
CDKL5O76039 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC20.88■□□□□ 0.93
CDKL5O76039 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CDKL5O76039 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CDKL5O76039 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CDKL5O76039 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CDKL5O76039 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC20.88■□□□□ 0.93
CDKL5O76039 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CDKL5O76039 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CDKL5O76039 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC20.87■□□□□ 0.93
CDKL5O76039 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
CDKL5O76039 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CDKL5O76039 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CDKL5O76039 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC20.87■□□□□ 0.93
CDKL5O76039 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
CDKL5O76039 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CDKL5O76039 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CDKL5O76039 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CDKL5O76039 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
CDKL5O76039 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CDKL5O76039 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC20.87■□□□□ 0.93
CDKL5O76039 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC20.87■□□□□ 0.93
CDKL5O76039 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CDKL5O76039 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC20.87■□□□□ 0.93
CDKL5O76039 DAP-202ENST00000432074 1048 ntTSL 2 BASIC20.87■□□□□ 0.93
CDKL5O76039 SPDYE13P-201ENST00000445314 798 ntBASIC20.87■□□□□ 0.93
CDKL5O76039 AL390719.2-201ENST00000606993 987 ntBASIC20.87■□□□□ 0.93
CDKL5O76039 WDR6-223ENST00000627177 207 ntTSL 2 BASIC20.87■□□□□ 0.93
CDKL5O76039 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CDKL5O76039 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC20.87■□□□□ 0.93
CDKL5O76039 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
CDKL5O76039 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC20.87■□□□□ 0.93
CDKL5O76039 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CDKL5O76039 MED25-212ENST00000618715 1467 ntTSL 5 BASIC20.87■□□□□ 0.93
CDKL5O76039 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
CDKL5O76039 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CDKL5O76039 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CDKL5O76039 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CDKL5O76039 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CDKL5O76039 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
CDKL5O76039 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CDKL5O76039 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
CDKL5O76039 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CDKL5O76039 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CDKL5O76039 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
CDKL5O76039 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
CDKL5O76039 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CDKL5O76039 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC20.86■□□□□ 0.93
CDKL5O76039 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC20.86■□□□□ 0.93
CDKL5O76039 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC20.86■□□□□ 0.93
CDKL5O76039 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CDKL5O76039 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CDKL5O76039 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
CDKL5O76039 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CDKL5O76039 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CDKL5O76039 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
CDKL5O76039 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
CDKL5O76039 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CDKL5O76039 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC20.86■□□□□ 0.93
CDKL5O76039 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC20.86■□□□□ 0.93
CDKL5O76039 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
CDKL5O76039 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC20.86■□□□□ 0.93
CDKL5O76039 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
CDKL5O76039 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
CDKL5O76039 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CDKL5O76039 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
CDKL5O76039 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CDKL5O76039 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
CDKL5O76039 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC20.86■□□□□ 0.93
CDKL5O76039 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CDKL5O76039 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC20.85■□□□□ 0.93
CDKL5O76039 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CDKL5O76039 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CDKL5O76039 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
CDKL5O76039 AL645929.1-201ENST00000420084 975 ntBASIC20.85■□□□□ 0.93
CDKL5O76039 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC20.85■□□□□ 0.93
CDKL5O76039 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC20.85■□□□□ 0.93
CDKL5O76039 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CDKL5O76039 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC20.85■□□□□ 0.93
CDKL5O76039 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC20.85■□□□□ 0.93
CDKL5O76039 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC20.85■□□□□ 0.93
CDKL5O76039 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CDKL5O76039 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
CDKL5O76039 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CDKL5O76039 Z83836.1-201ENST00000624605 1642 ntBASIC20.85■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms