Protein–RNA interactions for Protein: O60858

TRIM13, E3 ubiquitin-protein ligase TRIM13, humanhuman

Predictions only

Length 407 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM13O60858 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
TRIM13O60858 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
TRIM13O60858 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC17.69■□□□□ 0.42
TRIM13O60858 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC17.69■□□□□ 0.42
TRIM13O60858 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TRIM13O60858 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
TRIM13O60858 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
TRIM13O60858 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
TRIM13O60858 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
TRIM13O60858 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
TRIM13O60858 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC17.68■□□□□ 0.42
TRIM13O60858 AC022211.2-201ENST00000585075 2527 ntBASIC17.68■□□□□ 0.42
TRIM13O60858 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
TRIM13O60858 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRIM13O60858 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRIM13O60858 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRIM13O60858 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRIM13O60858 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC17.68■□□□□ 0.42
TRIM13O60858 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
TRIM13O60858 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
TRIM13O60858 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC17.68■□□□□ 0.42
TRIM13O60858 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC17.68■□□□□ 0.42
TRIM13O60858 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRIM13O60858 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRIM13O60858 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC17.68■□□□□ 0.42
TRIM13O60858 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC17.68■□□□□ 0.42
TRIM13O60858 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC17.68■□□□□ 0.42
TRIM13O60858 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
TRIM13O60858 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRIM13O60858 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
TRIM13O60858 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC17.68■□□□□ 0.42
TRIM13O60858 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRIM13O60858 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
TRIM13O60858 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRIM13O60858 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC17.68■□□□□ 0.42
TRIM13O60858 CROCCP2-202ENST00000412962 2773 ntBASIC17.68■□□□□ 0.42
TRIM13O60858 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC17.68■□□□□ 0.42
TRIM13O60858 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
TRIM13O60858 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC17.67■□□□□ 0.42
TRIM13O60858 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
TRIM13O60858 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRIM13O60858 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRIM13O60858 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRIM13O60858 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
TRIM13O60858 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRIM13O60858 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRIM13O60858 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRIM13O60858 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRIM13O60858 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
TRIM13O60858 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRIM13O60858 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC17.67■□□□□ 0.42
TRIM13O60858 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC17.67■□□□□ 0.42
TRIM13O60858 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC17.67■□□□□ 0.42
TRIM13O60858 AP003071.4-201ENST00000562276 1284 ntBASIC17.67■□□□□ 0.42
TRIM13O60858 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC17.67■□□□□ 0.42
TRIM13O60858 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC17.67■□□□□ 0.42
TRIM13O60858 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC17.67■□□□□ 0.42
TRIM13O60858 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRIM13O60858 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRIM13O60858 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC17.67■□□□□ 0.42
TRIM13O60858 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRIM13O60858 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRIM13O60858 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRIM13O60858 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
TRIM13O60858 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRIM13O60858 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRIM13O60858 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC17.67■□□□□ 0.42
TRIM13O60858 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
TRIM13O60858 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC17.67■□□□□ 0.42
TRIM13O60858 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC17.67■□□□□ 0.42
TRIM13O60858 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC17.66■□□□□ 0.42
TRIM13O60858 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
TRIM13O60858 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRIM13O60858 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRIM13O60858 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRIM13O60858 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRIM13O60858 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRIM13O60858 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRIM13O60858 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
TRIM13O60858 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC17.66■□□□□ 0.42
TRIM13O60858 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC17.66■□□□□ 0.42
TRIM13O60858 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRIM13O60858 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRIM13O60858 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRIM13O60858 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
TRIM13O60858 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
TRIM13O60858 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRIM13O60858 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRIM13O60858 UNC93B2-201ENST00000285383 730 ntBASIC17.66■□□□□ 0.42
TRIM13O60858 PRORSD1P-201ENST00000295112 541 ntBASIC17.66■□□□□ 0.42
TRIM13O60858 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRIM13O60858 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRIM13O60858 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
TRIM13O60858 AC007663.1-201ENST00000438948 1240 ntBASIC17.66■□□□□ 0.42
TRIM13O60858 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
TRIM13O60858 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC17.66■□□□□ 0.42
TRIM13O60858 REEP1-209ENST00000541910 969 ntTSL 2 BASIC17.66■□□□□ 0.42
TRIM13O60858 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
TRIM13O60858 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC17.66■□□□□ 0.42
TRIM13O60858 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC17.66■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 50.3 ms