Protein–RNA interactions for Protein: O14627

CDX4, Homeobox protein CDX-4, humanhuman

Predicted RBP Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX4O14627 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
CDX4O14627 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
CDX4O14627 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
CDX4O14627 AC005082.1-201ENST00000413042 2259 ntBASIC17.21■□□□□ 0.34
CDX4O14627 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.34
CDX4O14627 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CDX4O14627 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CDX4O14627 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CDX4O14627 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CDX4O14627 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC17.2■□□□□ 0.34
CDX4O14627 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CDX4O14627 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC17.2■□□□□ 0.34
CDX4O14627 MRPL20P1-201ENST00000400819 433 ntBASIC17.2■□□□□ 0.34
CDX4O14627 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CDX4O14627 AC004461.1-201ENST00000412461 403 ntBASIC17.2■□□□□ 0.34
CDX4O14627 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC17.2■□□□□ 0.34
CDX4O14627 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC17.2■□□□□ 0.34
CDX4O14627 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CDX4O14627 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC17.2■□□□□ 0.34
CDX4O14627 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
CDX4O14627 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC17.2■□□□□ 0.34
CDX4O14627 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
CDX4O14627 AC025580.3-201ENST00000617932 1424 ntBASIC17.2■□□□□ 0.34
CDX4O14627 SIRPAP1-201ENST00000448467 1770 ntBASIC17.2■□□□□ 0.34
CDX4O14627 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CDX4O14627 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
CDX4O14627 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CDX4O14627 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
CDX4O14627 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC17.19■□□□□ 0.34
CDX4O14627 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC17.19■□□□□ 0.34
CDX4O14627 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CDX4O14627 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CDX4O14627 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC17.19■□□□□ 0.34
CDX4O14627 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CDX4O14627 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC17.19■□□□□ 0.34
CDX4O14627 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
CDX4O14627 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CDX4O14627 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CDX4O14627 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CDX4O14627 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC17.19■□□□□ 0.34
CDX4O14627 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
CDX4O14627 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CDX4O14627 TAF8-206ENST00000472818 719 ntTSL 2 BASIC17.19■□□□□ 0.34
CDX4O14627 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CDX4O14627 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC17.19■□□□□ 0.34
CDX4O14627 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC17.19■□□□□ 0.34
CDX4O14627 OR7E47P-204ENST00000575924 449 ntBASIC17.19■□□□□ 0.34
CDX4O14627 MIR4745-201ENST00000577608 62 ntBASIC17.19■□□□□ 0.34
CDX4O14627 AC091812.2-201ENST00000619081 385 ntBASIC17.19■□□□□ 0.34
CDX4O14627 AC105339.1-204ENST00000636249 355 ntBASIC17.19■□□□□ 0.34
CDX4O14627 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
CDX4O14627 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CDX4O14627 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
CDX4O14627 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC17.19■□□□□ 0.34
CDX4O14627 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC17.19■□□□□ 0.34
CDX4O14627 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC17.19■□□□□ 0.34
CDX4O14627 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CDX4O14627 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CDX4O14627 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC17.19■□□□□ 0.34
CDX4O14627 AL049757.1-201ENST00000616842 1596 ntBASIC17.19■□□□□ 0.34
CDX4O14627 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CDX4O14627 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CDX4O14627 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
CDX4O14627 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC17.18■□□□□ 0.34
CDX4O14627 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CDX4O14627 GID4-202ENST00000376345 1391 ntTSL 3 BASIC17.18■□□□□ 0.34
CDX4O14627 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CDX4O14627 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CDX4O14627 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
CDX4O14627 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
CDX4O14627 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
CDX4O14627 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CDX4O14627 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CDX4O14627 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
CDX4O14627 DDT-204ENST00000404092 805 ntTSL 3 BASIC17.18■□□□□ 0.34
CDX4O14627 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CDX4O14627 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC17.18■□□□□ 0.34
CDX4O14627 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC17.18■□□□□ 0.34
CDX4O14627 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC17.18■□□□□ 0.34
CDX4O14627 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC17.18■□□□□ 0.34
CDX4O14627 AL805961.1-202ENST00000641562 540 ntBASIC17.18■□□□□ 0.34
CDX4O14627 AC092902.6-201ENST00000641783 218 ntBASIC17.18■□□□□ 0.34
CDX4O14627 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC17.18■□□□□ 0.34
CDX4O14627 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
CDX4O14627 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC17.18■□□□□ 0.34
CDX4O14627 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CDX4O14627 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC17.18■□□□□ 0.34
CDX4O14627 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
CDX4O14627 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
CDX4O14627 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
CDX4O14627 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CDX4O14627 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
CDX4O14627 BID-204ENST00000399767 2129 ntTSL 2 BASIC17.17■□□□□ 0.34
CDX4O14627 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CDX4O14627 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC17.17■□□□□ 0.34
CDX4O14627 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
CDX4O14627 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
CDX4O14627 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CDX4O14627 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
CDX4O14627 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC17.17■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms