Protein–RNA interactions for Protein: O14562

UBFD1, Ubiquitin domain-containing protein UBFD1, humanhuman

Known RBP Predictions only

Length 309 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBFD1O14562 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC17.41■□□□□ 0.38
UBFD1O14562 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
UBFD1O14562 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
UBFD1O14562 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
UBFD1O14562 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC17.41■□□□□ 0.38
UBFD1O14562 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
UBFD1O14562 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
UBFD1O14562 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC17.41■□□□□ 0.38
UBFD1O14562 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC17.41■□□□□ 0.38
UBFD1O14562 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC17.41■□□□□ 0.38
UBFD1O14562 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC17.41■□□□□ 0.38
UBFD1O14562 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC17.41■□□□□ 0.38
UBFD1O14562 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC17.41■□□□□ 0.38
UBFD1O14562 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC17.41■□□□□ 0.38
UBFD1O14562 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC17.41■□□□□ 0.38
UBFD1O14562 AL512604.3-201ENST00000569583 964 ntBASIC17.41■□□□□ 0.38
UBFD1O14562 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
UBFD1O14562 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
UBFD1O14562 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
UBFD1O14562 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
UBFD1O14562 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
UBFD1O14562 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
UBFD1O14562 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC17.41■□□□□ 0.38
UBFD1O14562 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
UBFD1O14562 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
UBFD1O14562 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
UBFD1O14562 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
UBFD1O14562 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC17.41■□□□□ 0.38
UBFD1O14562 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC17.41■□□□□ 0.38
UBFD1O14562 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
UBFD1O14562 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
UBFD1O14562 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC17.41■□□□□ 0.38
UBFD1O14562 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
UBFD1O14562 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC17.41■□□□□ 0.38
UBFD1O14562 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
UBFD1O14562 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC17.4■□□□□ 0.38
UBFD1O14562 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
UBFD1O14562 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
UBFD1O14562 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
UBFD1O14562 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
UBFD1O14562 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
UBFD1O14562 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC17.4■□□□□ 0.38
UBFD1O14562 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
UBFD1O14562 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
UBFD1O14562 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC17.4■□□□□ 0.38
UBFD1O14562 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
UBFD1O14562 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
UBFD1O14562 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC17.4■□□□□ 0.38
UBFD1O14562 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC17.4■□□□□ 0.38
UBFD1O14562 GCSHP2-201ENST00000560971 527 ntBASIC17.4■□□□□ 0.38
UBFD1O14562 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC17.4■□□□□ 0.38
UBFD1O14562 ARL16-209ENST00000573715 763 ntTSL 3 BASIC17.4■□□□□ 0.38
UBFD1O14562 ARL16-211ENST00000576135 694 ntTSL 3 BASIC17.4■□□□□ 0.38
UBFD1O14562 TK1-205ENST00000590862 642 ntTSL 3 BASIC17.4■□□□□ 0.38
UBFD1O14562 AC008687.5-201ENST00000593746 558 ntBASIC17.4■□□□□ 0.38
UBFD1O14562 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC17.4■□□□□ 0.38
UBFD1O14562 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
UBFD1O14562 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC17.4■□□□□ 0.38
UBFD1O14562 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
UBFD1O14562 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC17.4■□□□□ 0.38
UBFD1O14562 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
UBFD1O14562 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC17.4■□□□□ 0.38
UBFD1O14562 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC17.4■□□□□ 0.38
UBFD1O14562 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
UBFD1O14562 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC17.4■□□□□ 0.38
UBFD1O14562 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
UBFD1O14562 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
UBFD1O14562 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
UBFD1O14562 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC17.4■□□□□ 0.38
UBFD1O14562 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
UBFD1O14562 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
UBFD1O14562 AD000864.1-201ENST00000624076 2295 ntBASIC17.4■□□□□ 0.38
UBFD1O14562 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
UBFD1O14562 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC17.4■□□□□ 0.38
UBFD1O14562 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
UBFD1O14562 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC17.4■□□□□ 0.38
UBFD1O14562 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
UBFD1O14562 HLA-J-201ENST00000462773 1622 ntBASIC17.39■□□□□ 0.38
UBFD1O14562 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
UBFD1O14562 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
UBFD1O14562 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.38
UBFD1O14562 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
UBFD1O14562 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC17.39■□□□□ 0.37
UBFD1O14562 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC17.39■□□□□ 0.37
UBFD1O14562 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
UBFD1O14562 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
UBFD1O14562 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
UBFD1O14562 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC17.39■□□□□ 0.37
UBFD1O14562 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
UBFD1O14562 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
UBFD1O14562 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
UBFD1O14562 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC17.39■□□□□ 0.37
UBFD1O14562 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
UBFD1O14562 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC17.39■□□□□ 0.37
UBFD1O14562 AC113404.2-201ENST00000507884 177 ntBASIC17.39■□□□□ 0.37
UBFD1O14562 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC17.39■□□□□ 0.37
UBFD1O14562 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC17.39■□□□□ 0.37
UBFD1O14562 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC17.39■□□□□ 0.37
UBFD1O14562 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
UBFD1O14562 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms