Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SLC28A1O00337 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC17.3■□□□□ 0.36
SLC28A1O00337 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC17.3■□□□□ 0.36
SLC28A1O00337 AC113404.2-201ENST00000507884 177 ntBASIC17.3■□□□□ 0.36
SLC28A1O00337 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC17.3■□□□□ 0.36
SLC28A1O00337 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC17.3■□□□□ 0.36
SLC28A1O00337 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SLC28A1O00337 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
SLC28A1O00337 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC17.3■□□□□ 0.36
SLC28A1O00337 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
SLC28A1O00337 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
SLC28A1O00337 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC17.3■□□□□ 0.36
SLC28A1O00337 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC17.3■□□□□ 0.36
SLC28A1O00337 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC17.3■□□□□ 0.36
SLC28A1O00337 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SLC28A1O00337 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
SLC28A1O00337 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC17.3■□□□□ 0.36
SLC28A1O00337 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC17.29■□□□□ 0.36
SLC28A1O00337 LINC01568-207ENST00000641790 1380 ntBASIC17.29■□□□□ 0.36
SLC28A1O00337 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
SLC28A1O00337 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
SLC28A1O00337 AL355312.1-201ENST00000407115 2176 ntBASIC17.29■□□□□ 0.36
SLC28A1O00337 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC17.29■□□□□ 0.36
SLC28A1O00337 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SLC28A1O00337 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
SLC28A1O00337 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SLC28A1O00337 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
SLC28A1O00337 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
SLC28A1O00337 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SLC28A1O00337 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
SLC28A1O00337 AL645608.8-201ENST00000606034 2086 ntBASIC17.29■□□□□ 0.36
SLC28A1O00337 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SLC28A1O00337 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
SLC28A1O00337 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
SLC28A1O00337 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
SLC28A1O00337 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
SLC28A1O00337 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
SLC28A1O00337 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
SLC28A1O00337 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC17.29■□□□□ 0.36
SLC28A1O00337 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
SLC28A1O00337 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
SLC28A1O00337 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
SLC28A1O00337 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
SLC28A1O00337 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC17.29■□□□□ 0.36
SLC28A1O00337 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
SLC28A1O00337 AC133963.1-201ENST00000504166 1679 ntBASIC17.29■□□□□ 0.36
SLC28A1O00337 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
SLC28A1O00337 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
SLC28A1O00337 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
SLC28A1O00337 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SLC28A1O00337 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
SLC28A1O00337 LINC00602-201ENST00000629776 2065 ntBASIC17.28■□□□□ 0.36
SLC28A1O00337 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
SLC28A1O00337 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SLC28A1O00337 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SLC28A1O00337 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
SLC28A1O00337 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
SLC28A1O00337 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC17.28■□□□□ 0.36
SLC28A1O00337 KRT18P22-201ENST00000402024 1347 ntBASIC17.28■□□□□ 0.36
SLC28A1O00337 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SLC28A1O00337 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
SLC28A1O00337 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SLC28A1O00337 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
SLC28A1O00337 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
SLC28A1O00337 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC17.28■□□□□ 0.36
SLC28A1O00337 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC17.28■□□□□ 0.36
SLC28A1O00337 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
SLC28A1O00337 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SLC28A1O00337 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SLC28A1O00337 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC17.28■□□□□ 0.36
SLC28A1O00337 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC17.28■□□□□ 0.36
SLC28A1O00337 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC17.28■□□□□ 0.36
SLC28A1O00337 AC034232.1-201ENST00000506026 1064 ntBASIC17.28■□□□□ 0.36
SLC28A1O00337 AC139713.2-201ENST00000641328 2723 ntBASIC17.28■□□□□ 0.36
SLC28A1O00337 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
SLC28A1O00337 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
SLC28A1O00337 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SLC28A1O00337 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC17.28■□□□□ 0.36
SLC28A1O00337 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SLC28A1O00337 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
SLC28A1O00337 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
SLC28A1O00337 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SLC28A1O00337 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
SLC28A1O00337 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC17.28■□□□□ 0.36
SLC28A1O00337 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
SLC28A1O00337 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC17.28■□□□□ 0.36
SLC28A1O00337 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC17.28■□□□□ 0.36
SLC28A1O00337 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
SLC28A1O00337 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC17.27■□□□□ 0.36
SLC28A1O00337 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
SLC28A1O00337 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SLC28A1O00337 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC17.27■□□□□ 0.36
SLC28A1O00337 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SLC28A1O00337 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SLC28A1O00337 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC17.27■□□□□ 0.36
SLC28A1O00337 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
SLC28A1O00337 WAC-202ENST00000347934 2839 ntTSL 5 BASIC17.27■□□□□ 0.36
SLC28A1O00337 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SLC28A1O00337 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
SLC28A1O00337 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms