Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
SMKR1H3BMG3 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC13.15□□□□□ -0.3
SMKR1H3BMG3 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
SMKR1H3BMG3 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
SMKR1H3BMG3 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
SMKR1H3BMG3 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC13.15□□□□□ -0.3
SMKR1H3BMG3 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC13.15□□□□□ -0.3
SMKR1H3BMG3 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
SMKR1H3BMG3 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
SMKR1H3BMG3 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
SMKR1H3BMG3 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
SMKR1H3BMG3 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
SMKR1H3BMG3 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC13.15□□□□□ -0.3
SMKR1H3BMG3 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC13.15□□□□□ -0.3
SMKR1H3BMG3 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
SMKR1H3BMG3 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.31
SMKR1H3BMG3 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC13.15□□□□□ -0.31
SMKR1H3BMG3 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC13.15□□□□□ -0.31
SMKR1H3BMG3 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
SMKR1H3BMG3 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
SMKR1H3BMG3 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC13.14□□□□□ -0.31
SMKR1H3BMG3 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
SMKR1H3BMG3 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
SMKR1H3BMG3 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
SMKR1H3BMG3 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
SMKR1H3BMG3 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
SMKR1H3BMG3 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
SMKR1H3BMG3 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
SMKR1H3BMG3 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
SMKR1H3BMG3 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
SMKR1H3BMG3 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
SMKR1H3BMG3 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
SMKR1H3BMG3 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC13.14□□□□□ -0.31
SMKR1H3BMG3 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
SMKR1H3BMG3 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC13.14□□□□□ -0.31
SMKR1H3BMG3 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC13.14□□□□□ -0.31
SMKR1H3BMG3 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC13.14□□□□□ -0.31
SMKR1H3BMG3 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC13.14□□□□□ -0.31
SMKR1H3BMG3 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
SMKR1H3BMG3 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC13.14□□□□□ -0.31
SMKR1H3BMG3 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
SMKR1H3BMG3 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
SMKR1H3BMG3 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
SMKR1H3BMG3 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
SMKR1H3BMG3 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC13.14□□□□□ -0.31
SMKR1H3BMG3 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC13.14□□□□□ -0.31
SMKR1H3BMG3 AC097658.1-201ENST00000475555 843 ntBASIC13.14□□□□□ -0.31
SMKR1H3BMG3 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC13.14□□□□□ -0.31
SMKR1H3BMG3 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
SMKR1H3BMG3 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC13.14□□□□□ -0.31
SMKR1H3BMG3 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC13.14□□□□□ -0.31
SMKR1H3BMG3 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC13.14□□□□□ -0.31
SMKR1H3BMG3 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
SMKR1H3BMG3 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC13.14□□□□□ -0.31
SMKR1H3BMG3 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC13.14□□□□□ -0.31
SMKR1H3BMG3 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC13.14□□□□□ -0.31
SMKR1H3BMG3 AC080038.1-201ENST00000611274 1154 ntBASIC13.14□□□□□ -0.31
SMKR1H3BMG3 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC13.14□□□□□ -0.31
SMKR1H3BMG3 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
SMKR1H3BMG3 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC13.14□□□□□ -0.31
SMKR1H3BMG3 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
SMKR1H3BMG3 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
SMKR1H3BMG3 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
SMKR1H3BMG3 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
SMKR1H3BMG3 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
SMKR1H3BMG3 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC13.14□□□□□ -0.31
SMKR1H3BMG3 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC13.14□□□□□ -0.31
SMKR1H3BMG3 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
SMKR1H3BMG3 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC13.13□□□□□ -0.31
SMKR1H3BMG3 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
SMKR1H3BMG3 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC13.13□□□□□ -0.31
SMKR1H3BMG3 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
SMKR1H3BMG3 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
SMKR1H3BMG3 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC13.13□□□□□ -0.31
SMKR1H3BMG3 AC105020.1-201ENST00000435356 2205 ntBASIC13.13□□□□□ -0.31
SMKR1H3BMG3 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
SMKR1H3BMG3 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
SMKR1H3BMG3 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC13.13□□□□□ -0.31
SMKR1H3BMG3 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
SMKR1H3BMG3 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC13.13□□□□□ -0.31
SMKR1H3BMG3 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
SMKR1H3BMG3 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
SMKR1H3BMG3 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC13.13□□□□□ -0.31
SMKR1H3BMG3 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
SMKR1H3BMG3 AL138688.1-201ENST00000624851 1594 ntBASIC13.13□□□□□ -0.31
SMKR1H3BMG3 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC13.13□□□□□ -0.31
SMKR1H3BMG3 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
SMKR1H3BMG3 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC13.13□□□□□ -0.31
SMKR1H3BMG3 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
SMKR1H3BMG3 AP000593.1-201ENST00000393668 712 ntBASIC13.13□□□□□ -0.31
SMKR1H3BMG3 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC13.13□□□□□ -0.31
SMKR1H3BMG3 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC13.13□□□□□ -0.31
SMKR1H3BMG3 GLRB-205ENST00000512619 728 ntTSL 3 BASIC13.13□□□□□ -0.31
SMKR1H3BMG3 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC13.13□□□□□ -0.31
SMKR1H3BMG3 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC13.13□□□□□ -0.31
SMKR1H3BMG3 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
SMKR1H3BMG3 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
SMKR1H3BMG3 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC13.13□□□□□ -0.31
SMKR1H3BMG3 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
SMKR1H3BMG3 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC13.13□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms