Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SMIM28A0A1B0GU29 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SMIM28A0A1B0GU29 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SMIM28A0A1B0GU29 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SMIM28A0A1B0GU29 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SMIM28A0A1B0GU29 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SMIM28A0A1B0GU29 PPIE-208ENST00000470213 927 ntTSL 3 BASIC19.19■□□□□ 0.66
SMIM28A0A1B0GU29 AC122714.2-201ENST00000502787 707 ntBASIC19.19■□□□□ 0.66
SMIM28A0A1B0GU29 MOK-208ENST00000519058 917 ntTSL 2 BASIC19.19■□□□□ 0.66
SMIM28A0A1B0GU29 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC19.19■□□□□ 0.66
SMIM28A0A1B0GU29 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC19.19■□□□□ 0.66
SMIM28A0A1B0GU29 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC19.19■□□□□ 0.66
SMIM28A0A1B0GU29 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
SMIM28A0A1B0GU29 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SMIM28A0A1B0GU29 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SMIM28A0A1B0GU29 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SMIM28A0A1B0GU29 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SMIM28A0A1B0GU29 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC19.19■□□□□ 0.66
SMIM28A0A1B0GU29 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SMIM28A0A1B0GU29 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SMIM28A0A1B0GU29 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC19.19■□□□□ 0.66
SMIM28A0A1B0GU29 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SMIM28A0A1B0GU29 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC19.19■□□□□ 0.66
SMIM28A0A1B0GU29 PAN3-AS1-201ENST00000563843 1351 ntBASIC19.19■□□□□ 0.66
SMIM28A0A1B0GU29 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC19.18■□□□□ 0.66
SMIM28A0A1B0GU29 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SMIM28A0A1B0GU29 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC19.18■□□□□ 0.66
SMIM28A0A1B0GU29 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
SMIM28A0A1B0GU29 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
SMIM28A0A1B0GU29 MED29-202ENST00000594368 1471 ntTSL 2 BASIC19.18■□□□□ 0.66
SMIM28A0A1B0GU29 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SMIM28A0A1B0GU29 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SMIM28A0A1B0GU29 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SMIM28A0A1B0GU29 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SMIM28A0A1B0GU29 COX5BP2-201ENST00000392354 334 ntBASIC19.18■□□□□ 0.66
SMIM28A0A1B0GU29 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
SMIM28A0A1B0GU29 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC19.18■□□□□ 0.66
SMIM28A0A1B0GU29 PON3-205ENST00000451904 1053 ntTSL 3 BASIC19.18■□□□□ 0.66
SMIM28A0A1B0GU29 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
SMIM28A0A1B0GU29 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SMIM28A0A1B0GU29 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SMIM28A0A1B0GU29 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC19.18■□□□□ 0.66
SMIM28A0A1B0GU29 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
SMIM28A0A1B0GU29 STK4-201ENST00000372801 2038 ntTSL 2 BASIC19.18■□□□□ 0.66
SMIM28A0A1B0GU29 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC19.18■□□□□ 0.66
SMIM28A0A1B0GU29 HLA-A-201ENST00000376802 1334 ntBASIC19.18■□□□□ 0.66
SMIM28A0A1B0GU29 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
SMIM28A0A1B0GU29 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
SMIM28A0A1B0GU29 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
SMIM28A0A1B0GU29 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
SMIM28A0A1B0GU29 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SMIM28A0A1B0GU29 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SMIM28A0A1B0GU29 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SMIM28A0A1B0GU29 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SMIM28A0A1B0GU29 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
SMIM28A0A1B0GU29 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC19.17■□□□□ 0.66
SMIM28A0A1B0GU29 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC19.17■□□□□ 0.66
SMIM28A0A1B0GU29 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SMIM28A0A1B0GU29 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC19.17■□□□□ 0.66
SMIM28A0A1B0GU29 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC19.17■□□□□ 0.66
SMIM28A0A1B0GU29 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SMIM28A0A1B0GU29 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC19.17■□□□□ 0.66
SMIM28A0A1B0GU29 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
SMIM28A0A1B0GU29 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
SMIM28A0A1B0GU29 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC19.17■□□□□ 0.66
SMIM28A0A1B0GU29 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SMIM28A0A1B0GU29 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SMIM28A0A1B0GU29 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SMIM28A0A1B0GU29 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC19.17■□□□□ 0.66
SMIM28A0A1B0GU29 SOD2-201ENST00000337404 991 ntTSL 2 BASIC19.17■□□□□ 0.66
SMIM28A0A1B0GU29 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
SMIM28A0A1B0GU29 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC19.17■□□□□ 0.66
SMIM28A0A1B0GU29 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SMIM28A0A1B0GU29 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC19.17■□□□□ 0.66
SMIM28A0A1B0GU29 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC19.17■□□□□ 0.66
SMIM28A0A1B0GU29 AC064862.7-201ENST00000604520 867 ntBASIC19.17■□□□□ 0.66
SMIM28A0A1B0GU29 AC148477.8-201ENST00000624298 468 ntBASIC19.17■□□□□ 0.66
SMIM28A0A1B0GU29 AP000867.4-201ENST00000641616 219 ntBASIC19.17■□□□□ 0.66
SMIM28A0A1B0GU29 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SMIM28A0A1B0GU29 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SMIM28A0A1B0GU29 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC19.17■□□□□ 0.66
SMIM28A0A1B0GU29 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
SMIM28A0A1B0GU29 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
SMIM28A0A1B0GU29 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SMIM28A0A1B0GU29 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
SMIM28A0A1B0GU29 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
SMIM28A0A1B0GU29 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
SMIM28A0A1B0GU29 AL020996.1-203ENST00000536896 2307 ntBASIC19.17■□□□□ 0.66
SMIM28A0A1B0GU29 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SMIM28A0A1B0GU29 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SMIM28A0A1B0GU29 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC19.16■□□□□ 0.66
SMIM28A0A1B0GU29 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
SMIM28A0A1B0GU29 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC19.16■□□□□ 0.66
SMIM28A0A1B0GU29 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
SMIM28A0A1B0GU29 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
SMIM28A0A1B0GU29 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SMIM28A0A1B0GU29 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SMIM28A0A1B0GU29 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SMIM28A0A1B0GU29 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SMIM28A0A1B0GU29 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms