Protein–RNA interactions for Protein: Q9Y6N9

USH1C, Harmonin, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH1CQ9Y6N9 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
USH1CQ9Y6N9 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
USH1CQ9Y6N9 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC17.94■□□□□ 0.46
USH1CQ9Y6N9 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
USH1CQ9Y6N9 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
USH1CQ9Y6N9 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
USH1CQ9Y6N9 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC17.93■□□□□ 0.46
USH1CQ9Y6N9 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
USH1CQ9Y6N9 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
USH1CQ9Y6N9 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
USH1CQ9Y6N9 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC17.93■□□□□ 0.46
USH1CQ9Y6N9 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
USH1CQ9Y6N9 LTF-203ENST00000426532 2494 ntTSL 2 BASIC17.93■□□□□ 0.46
USH1CQ9Y6N9 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
USH1CQ9Y6N9 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.93■□□□□ 0.46
USH1CQ9Y6N9 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
USH1CQ9Y6N9 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
USH1CQ9Y6N9 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC17.93■□□□□ 0.46
USH1CQ9Y6N9 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
USH1CQ9Y6N9 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
USH1CQ9Y6N9 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
USH1CQ9Y6N9 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
USH1CQ9Y6N9 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC17.93■□□□□ 0.46
USH1CQ9Y6N9 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC17.93■□□□□ 0.46
USH1CQ9Y6N9 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC17.93■□□□□ 0.46
USH1CQ9Y6N9 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
USH1CQ9Y6N9 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC17.93■□□□□ 0.46
USH1CQ9Y6N9 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
USH1CQ9Y6N9 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC17.93■□□□□ 0.46
USH1CQ9Y6N9 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
USH1CQ9Y6N9 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
USH1CQ9Y6N9 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
USH1CQ9Y6N9 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
USH1CQ9Y6N9 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
USH1CQ9Y6N9 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
USH1CQ9Y6N9 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
USH1CQ9Y6N9 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
USH1CQ9Y6N9 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC17.93■□□□□ 0.46
USH1CQ9Y6N9 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
USH1CQ9Y6N9 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
USH1CQ9Y6N9 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC17.92■□□□□ 0.46
USH1CQ9Y6N9 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
USH1CQ9Y6N9 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC17.92■□□□□ 0.46
USH1CQ9Y6N9 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
USH1CQ9Y6N9 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC17.92■□□□□ 0.46
USH1CQ9Y6N9 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
USH1CQ9Y6N9 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
USH1CQ9Y6N9 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
USH1CQ9Y6N9 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
USH1CQ9Y6N9 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
USH1CQ9Y6N9 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC17.92■□□□□ 0.46
USH1CQ9Y6N9 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC17.92■□□□□ 0.46
USH1CQ9Y6N9 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC17.92■□□□□ 0.46
USH1CQ9Y6N9 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
USH1CQ9Y6N9 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC17.92■□□□□ 0.46
USH1CQ9Y6N9 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC17.92■□□□□ 0.46
USH1CQ9Y6N9 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC17.92■□□□□ 0.46
USH1CQ9Y6N9 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC17.92■□□□□ 0.46
USH1CQ9Y6N9 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
USH1CQ9Y6N9 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
USH1CQ9Y6N9 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
USH1CQ9Y6N9 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
USH1CQ9Y6N9 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC17.92■□□□□ 0.46
USH1CQ9Y6N9 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
USH1CQ9Y6N9 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC17.92■□□□□ 0.46
USH1CQ9Y6N9 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
USH1CQ9Y6N9 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
USH1CQ9Y6N9 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
USH1CQ9Y6N9 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
USH1CQ9Y6N9 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
USH1CQ9Y6N9 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
USH1CQ9Y6N9 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC17.92■□□□□ 0.46
USH1CQ9Y6N9 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
USH1CQ9Y6N9 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC17.92■□□□□ 0.46
USH1CQ9Y6N9 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
USH1CQ9Y6N9 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC17.91■□□□□ 0.46
USH1CQ9Y6N9 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
USH1CQ9Y6N9 CROCCP2-202ENST00000412962 2773 ntBASIC17.91■□□□□ 0.46
USH1CQ9Y6N9 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC17.91■□□□□ 0.46
USH1CQ9Y6N9 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC17.91■□□□□ 0.46
USH1CQ9Y6N9 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
USH1CQ9Y6N9 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC17.91■□□□□ 0.46
USH1CQ9Y6N9 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
USH1CQ9Y6N9 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
USH1CQ9Y6N9 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
USH1CQ9Y6N9 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
USH1CQ9Y6N9 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
USH1CQ9Y6N9 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
USH1CQ9Y6N9 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC17.91■□□□□ 0.46
USH1CQ9Y6N9 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC17.91■□□□□ 0.46
USH1CQ9Y6N9 CKBP1-201ENST00000565489 1086 ntBASIC17.91■□□□□ 0.46
USH1CQ9Y6N9 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
USH1CQ9Y6N9 AC069544.1-201ENST00000609399 999 ntBASIC17.91■□□□□ 0.46
USH1CQ9Y6N9 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
USH1CQ9Y6N9 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC17.91■□□□□ 0.46
USH1CQ9Y6N9 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
USH1CQ9Y6N9 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
USH1CQ9Y6N9 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC17.91■□□□□ 0.46
USH1CQ9Y6N9 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
USH1CQ9Y6N9 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 17 ms