Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
USP3Q9Y6I4 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC18.75■□□□□ 0.59
USP3Q9Y6I4 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC18.75■□□□□ 0.59
USP3Q9Y6I4 KRT16P4-201ENST00000453883 522 ntBASIC18.75■□□□□ 0.59
USP3Q9Y6I4 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC18.75■□□□□ 0.59
USP3Q9Y6I4 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC18.75■□□□□ 0.59
USP3Q9Y6I4 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC18.75■□□□□ 0.59
USP3Q9Y6I4 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC18.75■□□□□ 0.59
USP3Q9Y6I4 AC138894.3-201ENST00000603787 634 ntBASIC18.75■□□□□ 0.59
USP3Q9Y6I4 AL732292.2-201ENST00000609649 430 ntBASIC18.75■□□□□ 0.59
USP3Q9Y6I4 AC114341.1-201ENST00000618070 349 ntBASIC18.75■□□□□ 0.59
USP3Q9Y6I4 TP73-AS1-210ENST00000637775 1455 ntBASIC18.75■□□□□ 0.59
USP3Q9Y6I4 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC18.75■□□□□ 0.59
USP3Q9Y6I4 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC18.75■□□□□ 0.59
USP3Q9Y6I4 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
USP3Q9Y6I4 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC18.75■□□□□ 0.59
USP3Q9Y6I4 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
USP3Q9Y6I4 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC18.74■□□□□ 0.59
USP3Q9Y6I4 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
USP3Q9Y6I4 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
USP3Q9Y6I4 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
USP3Q9Y6I4 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC18.74■□□□□ 0.59
USP3Q9Y6I4 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC18.74■□□□□ 0.59
USP3Q9Y6I4 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
USP3Q9Y6I4 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
USP3Q9Y6I4 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
USP3Q9Y6I4 STK4-201ENST00000372801 2038 ntTSL 2 BASIC18.74■□□□□ 0.59
USP3Q9Y6I4 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
USP3Q9Y6I4 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
USP3Q9Y6I4 CD276-203ENST00000537340 2439 ntTSL 2 BASIC18.74■□□□□ 0.59
USP3Q9Y6I4 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
USP3Q9Y6I4 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
USP3Q9Y6I4 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
USP3Q9Y6I4 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
USP3Q9Y6I4 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
USP3Q9Y6I4 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
USP3Q9Y6I4 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC18.74■□□□□ 0.59
USP3Q9Y6I4 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
USP3Q9Y6I4 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
USP3Q9Y6I4 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC18.74■□□□□ 0.59
USP3Q9Y6I4 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
USP3Q9Y6I4 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
USP3Q9Y6I4 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
USP3Q9Y6I4 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC18.74■□□□□ 0.59
USP3Q9Y6I4 UNC93B7-201ENST00000509439 705 ntBASIC18.74■□□□□ 0.59
USP3Q9Y6I4 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC18.74■□□□□ 0.59
USP3Q9Y6I4 AC091304.2-201ENST00000564639 760 ntBASIC18.74■□□□□ 0.59
USP3Q9Y6I4 AC011467.2-201ENST00000598425 242 ntBASIC18.74■□□□□ 0.59
USP3Q9Y6I4 IGHV3OR16-7-201ENST00000604106 360 ntBASIC18.74■□□□□ 0.59
USP3Q9Y6I4 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
USP3Q9Y6I4 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
USP3Q9Y6I4 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC18.74■□□□□ 0.59
USP3Q9Y6I4 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC18.74■□□□□ 0.59
USP3Q9Y6I4 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
USP3Q9Y6I4 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC18.74■□□□□ 0.59
USP3Q9Y6I4 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC18.74■□□□□ 0.59
USP3Q9Y6I4 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
USP3Q9Y6I4 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
USP3Q9Y6I4 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC18.74■□□□□ 0.59
USP3Q9Y6I4 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
USP3Q9Y6I4 AC100803.2-201ENST00000562459 1963 ntBASIC18.73■□□□□ 0.59
USP3Q9Y6I4 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
USP3Q9Y6I4 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC18.73■□□□□ 0.59
USP3Q9Y6I4 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
USP3Q9Y6I4 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC18.73■□□□□ 0.59
USP3Q9Y6I4 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
USP3Q9Y6I4 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
USP3Q9Y6I4 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
USP3Q9Y6I4 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC18.73■□□□□ 0.59
USP3Q9Y6I4 AC018470.1-201ENST00000624790 3129 ntBASIC18.73■□□□□ 0.59
USP3Q9Y6I4 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
USP3Q9Y6I4 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC18.73■□□□□ 0.59
USP3Q9Y6I4 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
USP3Q9Y6I4 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
USP3Q9Y6I4 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC18.73■□□□□ 0.59
USP3Q9Y6I4 RCN1P2-201ENST00000398357 915 ntBASIC18.73■□□□□ 0.59
USP3Q9Y6I4 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
USP3Q9Y6I4 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC18.73■□□□□ 0.59
USP3Q9Y6I4 MIR5100-201ENST00000579544 119 ntBASIC18.73■□□□□ 0.59
USP3Q9Y6I4 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC18.73■□□□□ 0.59
USP3Q9Y6I4 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC18.73■□□□□ 0.59
USP3Q9Y6I4 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC18.73■□□□□ 0.59
USP3Q9Y6I4 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC18.73■□□□□ 0.59
USP3Q9Y6I4 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC18.73■□□□□ 0.59
USP3Q9Y6I4 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
USP3Q9Y6I4 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
USP3Q9Y6I4 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
USP3Q9Y6I4 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
USP3Q9Y6I4 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
USP3Q9Y6I4 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
USP3Q9Y6I4 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
USP3Q9Y6I4 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
USP3Q9Y6I4 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC18.72■□□□□ 0.59
USP3Q9Y6I4 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
USP3Q9Y6I4 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC18.72■□□□□ 0.59
USP3Q9Y6I4 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC18.72■□□□□ 0.59
USP3Q9Y6I4 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
USP3Q9Y6I4 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC18.72■□□□□ 0.59
USP3Q9Y6I4 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
USP3Q9Y6I4 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC18.72■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms