Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC18.43■□□□□ 0.54
TDP1Q9NUW8 CSF3-203ENST00000394148 622 ntTSL 3 BASIC18.43■□□□□ 0.54
TDP1Q9NUW8 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
TDP1Q9NUW8 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC18.43■□□□□ 0.54
TDP1Q9NUW8 RPP21-221ENST00000428040 594 ntTSL 2 BASIC18.43■□□□□ 0.54
TDP1Q9NUW8 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC18.43■□□□□ 0.54
TDP1Q9NUW8 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
TDP1Q9NUW8 POLD2P1-201ENST00000511220 997 ntBASIC18.43■□□□□ 0.54
TDP1Q9NUW8 MSRA-206ENST00000521209 814 ntTSL 3 BASIC18.43■□□□□ 0.54
TDP1Q9NUW8 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC18.43■□□□□ 0.54
TDP1Q9NUW8 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
TDP1Q9NUW8 AC012640.2-201ENST00000561606 901 ntBASIC18.43■□□□□ 0.54
TDP1Q9NUW8 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
TDP1Q9NUW8 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC18.43■□□□□ 0.54
TDP1Q9NUW8 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
TDP1Q9NUW8 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
TDP1Q9NUW8 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC18.43■□□□□ 0.54
TDP1Q9NUW8 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
TDP1Q9NUW8 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC18.43■□□□□ 0.54
TDP1Q9NUW8 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC18.43■□□□□ 0.54
TDP1Q9NUW8 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
TDP1Q9NUW8 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
TDP1Q9NUW8 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
TDP1Q9NUW8 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
TDP1Q9NUW8 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
TDP1Q9NUW8 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
TDP1Q9NUW8 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TDP1Q9NUW8 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TDP1Q9NUW8 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
TDP1Q9NUW8 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC18.42■□□□□ 0.54
TDP1Q9NUW8 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
TDP1Q9NUW8 AC079776.2-201ENST00000641154 1609 ntBASIC18.42■□□□□ 0.54
TDP1Q9NUW8 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
TDP1Q9NUW8 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
TDP1Q9NUW8 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
TDP1Q9NUW8 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TDP1Q9NUW8 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TDP1Q9NUW8 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
TDP1Q9NUW8 INIP-202ENST00000374236 874 ntTSL 2 BASIC18.42■□□□□ 0.54
TDP1Q9NUW8 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC18.42■□□□□ 0.54
TDP1Q9NUW8 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
TDP1Q9NUW8 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC18.42■□□□□ 0.54
TDP1Q9NUW8 AC092910.1-201ENST00000482027 1129 ntBASIC18.42■□□□□ 0.54
TDP1Q9NUW8 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC18.42■□□□□ 0.54
TDP1Q9NUW8 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC18.42■□□□□ 0.54
TDP1Q9NUW8 CD63-204ENST00000546939 779 ntTSL 3 BASIC18.42■□□□□ 0.54
TDP1Q9NUW8 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC18.42■□□□□ 0.54
TDP1Q9NUW8 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC18.42■□□□□ 0.54
TDP1Q9NUW8 AC145285.3-201ENST00000564603 959 ntBASIC18.42■□□□□ 0.54
TDP1Q9NUW8 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC18.42■□□□□ 0.54
TDP1Q9NUW8 TERC-201ENST00000602385 541 ntBASIC18.42■□□□□ 0.54
TDP1Q9NUW8 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC18.42■□□□□ 0.54
TDP1Q9NUW8 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC18.42■□□□□ 0.54
TDP1Q9NUW8 AC008735.5-201ENST00000623544 497 ntBASIC18.42■□□□□ 0.54
TDP1Q9NUW8 AC107918.4-202ENST00000641623 219 ntBASIC18.42■□□□□ 0.54
TDP1Q9NUW8 PMS2P7-201ENST00000506558 1336 ntBASIC18.42■□□□□ 0.54
TDP1Q9NUW8 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC18.42■□□□□ 0.54
TDP1Q9NUW8 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TDP1Q9NUW8 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
TDP1Q9NUW8 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC18.42■□□□□ 0.54
TDP1Q9NUW8 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC18.42■□□□□ 0.54
TDP1Q9NUW8 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
TDP1Q9NUW8 AP000974.1-201ENST00000623909 2387 ntBASIC18.41■□□□□ 0.54
TDP1Q9NUW8 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
TDP1Q9NUW8 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
TDP1Q9NUW8 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
TDP1Q9NUW8 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TDP1Q9NUW8 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TDP1Q9NUW8 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
TDP1Q9NUW8 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
TDP1Q9NUW8 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC18.41■□□□□ 0.54
TDP1Q9NUW8 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
TDP1Q9NUW8 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC18.41■□□□□ 0.54
TDP1Q9NUW8 KRT18P13-201ENST00000400056 1290 ntBASIC18.41■□□□□ 0.54
TDP1Q9NUW8 MIR940-201ENST00000401276 94 ntBASIC18.41■□□□□ 0.54
TDP1Q9NUW8 AC103564.2-201ENST00000432853 1299 ntBASIC18.41■□□□□ 0.54
TDP1Q9NUW8 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC18.41■□□□□ 0.54
TDP1Q9NUW8 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC18.41■□□□□ 0.54
TDP1Q9NUW8 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC18.41■□□□□ 0.54
TDP1Q9NUW8 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC18.41■□□□□ 0.54
TDP1Q9NUW8 AD001527.2-201ENST00000622994 785 ntBASIC18.41■□□□□ 0.54
TDP1Q9NUW8 CAND2-206ENST00000626378 333 ntTSL 5 BASIC18.41■□□□□ 0.54
TDP1Q9NUW8 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TDP1Q9NUW8 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC18.41■□□□□ 0.54
TDP1Q9NUW8 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC18.41■□□□□ 0.54
TDP1Q9NUW8 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC18.41■□□□□ 0.54
TDP1Q9NUW8 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
TDP1Q9NUW8 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
TDP1Q9NUW8 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
TDP1Q9NUW8 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TDP1Q9NUW8 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
TDP1Q9NUW8 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TDP1Q9NUW8 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
TDP1Q9NUW8 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TDP1Q9NUW8 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC18.4■□□□□ 0.54
TDP1Q9NUW8 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TDP1Q9NUW8 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
TDP1Q9NUW8 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
TDP1Q9NUW8 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TDP1Q9NUW8 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 78.1 ms