Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC15.9■□□□□ 0.14
MMP28Q9H239 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC15.9■□□□□ 0.14
MMP28Q9H239 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC15.9■□□□□ 0.14
MMP28Q9H239 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC15.9■□□□□ 0.14
MMP28Q9H239 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC15.9■□□□□ 0.14
MMP28Q9H239 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
MMP28Q9H239 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
MMP28Q9H239 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
MMP28Q9H239 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC15.9■□□□□ 0.14
MMP28Q9H239 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
MMP28Q9H239 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
MMP28Q9H239 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC15.9■□□□□ 0.14
MMP28Q9H239 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC15.9■□□□□ 0.14
MMP28Q9H239 KRASP1-201ENST00000407852 552 ntBASIC15.9■□□□□ 0.14
MMP28Q9H239 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC15.9■□□□□ 0.14
MMP28Q9H239 LY6E-205ENST00000519611 635 ntTSL 3 BASIC15.9■□□□□ 0.14
MMP28Q9H239 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC15.9■□□□□ 0.14
MMP28Q9H239 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC15.9■□□□□ 0.14
MMP28Q9H239 RHOD-202ENST00000532559 538 ntTSL 3 BASIC15.9■□□□□ 0.14
MMP28Q9H239 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
MMP28Q9H239 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC15.9■□□□□ 0.14
MMP28Q9H239 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC15.9■□□□□ 0.14
MMP28Q9H239 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC15.9■□□□□ 0.14
MMP28Q9H239 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
MMP28Q9H239 AL359736.2-201ENST00000621992 437 ntBASIC15.9■□□□□ 0.14
MMP28Q9H239 FAM197Y4-202ENST00000622692 608 ntBASIC15.9■□□□□ 0.14
MMP28Q9H239 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
MMP28Q9H239 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC15.9■□□□□ 0.14
MMP28Q9H239 KRT8P8-201ENST00000434750 1448 ntBASIC15.9■□□□□ 0.14
MMP28Q9H239 AC006116.8-202ENST00000587620 1550 ntBASIC15.9■□□□□ 0.14
MMP28Q9H239 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC15.9■□□□□ 0.14
MMP28Q9H239 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
MMP28Q9H239 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC15.9■□□□□ 0.14
MMP28Q9H239 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
MMP28Q9H239 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
MMP28Q9H239 STK4-201ENST00000372801 2038 ntTSL 2 BASIC15.9■□□□□ 0.14
MMP28Q9H239 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC15.9■□□□□ 0.14
MMP28Q9H239 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
MMP28Q9H239 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
MMP28Q9H239 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
MMP28Q9H239 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
MMP28Q9H239 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
MMP28Q9H239 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
MMP28Q9H239 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
MMP28Q9H239 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
MMP28Q9H239 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
MMP28Q9H239 HLA-DQB1-201ENST00000374943 1656 ntBASIC15.89■□□□□ 0.13
MMP28Q9H239 HEIH-201ENST00000623091 1652 ntBASIC15.89■□□□□ 0.13
MMP28Q9H239 OR6D1P-203ENST00000641209 4860 ntBASIC15.89■□□□□ 0.13
MMP28Q9H239 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC15.89■□□□□ 0.13
MMP28Q9H239 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
MMP28Q9H239 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
MMP28Q9H239 AC103702.1-201ENST00000548801 2630 ntBASIC15.89■□□□□ 0.13
MMP28Q9H239 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
MMP28Q9H239 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
MMP28Q9H239 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
MMP28Q9H239 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
MMP28Q9H239 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
MMP28Q9H239 PGR-209ENST00000617858 2816 ntTSL 5 BASIC15.89■□□□□ 0.13
MMP28Q9H239 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC15.89■□□□□ 0.13
MMP28Q9H239 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
MMP28Q9H239 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC15.89■□□□□ 0.13
MMP28Q9H239 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC15.89■□□□□ 0.13
MMP28Q9H239 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC15.89■□□□□ 0.13
MMP28Q9H239 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC15.89■□□□□ 0.13
MMP28Q9H239 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
MMP28Q9H239 UBE2SP1-201ENST00000450587 669 ntBASIC15.89■□□□□ 0.13
MMP28Q9H239 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC15.89■□□□□ 0.13
MMP28Q9H239 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC15.89■□□□□ 0.13
MMP28Q9H239 NME1-207ENST00000480143 964 ntTSL 2 BASIC15.89■□□□□ 0.13
MMP28Q9H239 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC15.89■□□□□ 0.13
MMP28Q9H239 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
MMP28Q9H239 F2R-202ENST00000505600 442 ntTSL 2 BASIC15.89■□□□□ 0.13
MMP28Q9H239 AC008550.1-201ENST00000511500 884 ntBASIC15.89■□□□□ 0.13
MMP28Q9H239 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC15.89■□□□□ 0.13
MMP28Q9H239 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC15.89■□□□□ 0.13
MMP28Q9H239 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
MMP28Q9H239 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC15.89■□□□□ 0.13
MMP28Q9H239 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
MMP28Q9H239 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC15.89■□□□□ 0.13
MMP28Q9H239 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC15.89■□□□□ 0.13
MMP28Q9H239 MME-217ENST00000616757 1315 ntTSL 5 BASIC15.89■□□□□ 0.13
MMP28Q9H239 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
MMP28Q9H239 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
MMP28Q9H239 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
MMP28Q9H239 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC15.89■□□□□ 0.13
MMP28Q9H239 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC15.89■□□□□ 0.13
MMP28Q9H239 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
MMP28Q9H239 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
MMP28Q9H239 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
MMP28Q9H239 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
MMP28Q9H239 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC15.88■□□□□ 0.13
MMP28Q9H239 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC15.88■□□□□ 0.13
MMP28Q9H239 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
MMP28Q9H239 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
MMP28Q9H239 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
MMP28Q9H239 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
MMP28Q9H239 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
MMP28Q9H239 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
MMP28Q9H239 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms