Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
LINC00477Q96M19 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
LINC00477Q96M19 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
LINC00477Q96M19 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC13.49□□□□□ -0.25
LINC00477Q96M19 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
LINC00477Q96M19 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC13.49□□□□□ -0.25
LINC00477Q96M19 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC13.49□□□□□ -0.25
LINC00477Q96M19 AP006294.2-201ENST00000641667 209 ntBASIC13.49□□□□□ -0.25
LINC00477Q96M19 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
LINC00477Q96M19 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
LINC00477Q96M19 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC13.49□□□□□ -0.25
LINC00477Q96M19 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
LINC00477Q96M19 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC13.49□□□□□ -0.25
LINC00477Q96M19 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
LINC00477Q96M19 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
LINC00477Q96M19 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC13.49□□□□□ -0.25
LINC00477Q96M19 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
LINC00477Q96M19 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC13.49□□□□□ -0.25
LINC00477Q96M19 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
LINC00477Q96M19 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
LINC00477Q96M19 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
LINC00477Q96M19 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
LINC00477Q96M19 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC13.49□□□□□ -0.25
LINC00477Q96M19 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC13.49□□□□□ -0.25
LINC00477Q96M19 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC13.49□□□□□ -0.25
LINC00477Q96M19 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
LINC00477Q96M19 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC13.48□□□□□ -0.25
LINC00477Q96M19 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
LINC00477Q96M19 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
LINC00477Q96M19 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
LINC00477Q96M19 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC13.48□□□□□ -0.25
LINC00477Q96M19 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
LINC00477Q96M19 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
LINC00477Q96M19 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
LINC00477Q96M19 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
LINC00477Q96M19 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
LINC00477Q96M19 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC13.48□□□□□ -0.25
LINC00477Q96M19 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
LINC00477Q96M19 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
LINC00477Q96M19 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
LINC00477Q96M19 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC13.48□□□□□ -0.25
LINC00477Q96M19 GAD2-202ENST00000376248 680 ntTSL 5 BASIC13.48□□□□□ -0.25
LINC00477Q96M19 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
LINC00477Q96M19 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC13.48□□□□□ -0.25
LINC00477Q96M19 TSPY7P-201ENST00000431358 1114 ntBASIC13.48□□□□□ -0.25
LINC00477Q96M19 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC13.48□□□□□ -0.25
LINC00477Q96M19 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC13.48□□□□□ -0.25
LINC00477Q96M19 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC13.48□□□□□ -0.25
LINC00477Q96M19 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC13.48□□□□□ -0.25
LINC00477Q96M19 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
LINC00477Q96M19 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
LINC00477Q96M19 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
LINC00477Q96M19 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
LINC00477Q96M19 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
LINC00477Q96M19 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
LINC00477Q96M19 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
LINC00477Q96M19 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
LINC00477Q96M19 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC13.48□□□□□ -0.25
LINC00477Q96M19 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
LINC00477Q96M19 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
LINC00477Q96M19 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
LINC00477Q96M19 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
LINC00477Q96M19 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC13.48□□□□□ -0.25
LINC00477Q96M19 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC13.48□□□□□ -0.25
LINC00477Q96M19 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
LINC00477Q96M19 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
LINC00477Q96M19 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
LINC00477Q96M19 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC13.47□□□□□ -0.25
LINC00477Q96M19 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC13.47□□□□□ -0.25
LINC00477Q96M19 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC13.47□□□□□ -0.25
LINC00477Q96M19 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
LINC00477Q96M19 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
LINC00477Q96M19 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
LINC00477Q96M19 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC13.47□□□□□ -0.25
LINC00477Q96M19 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC13.47□□□□□ -0.25
LINC00477Q96M19 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
LINC00477Q96M19 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC13.47□□□□□ -0.25
LINC00477Q96M19 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC13.47□□□□□ -0.25
LINC00477Q96M19 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
LINC00477Q96M19 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
LINC00477Q96M19 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC13.47□□□□□ -0.25
LINC00477Q96M19 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
LINC00477Q96M19 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC13.47□□□□□ -0.25
LINC00477Q96M19 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC13.47□□□□□ -0.25
LINC00477Q96M19 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC13.47□□□□□ -0.25
LINC00477Q96M19 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC13.47□□□□□ -0.25
LINC00477Q96M19 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC13.47□□□□□ -0.25
LINC00477Q96M19 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC13.47□□□□□ -0.25
LINC00477Q96M19 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC13.47□□□□□ -0.25
LINC00477Q96M19 AC116407.2-201ENST00000613639 860 ntBASIC13.47□□□□□ -0.25
LINC00477Q96M19 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
LINC00477Q96M19 AC092865.7-201ENST00000641832 219 ntBASIC13.47□□□□□ -0.25
LINC00477Q96M19 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC13.47□□□□□ -0.25
LINC00477Q96M19 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
LINC00477Q96M19 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
LINC00477Q96M19 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC13.47□□□□□ -0.25
LINC00477Q96M19 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
LINC00477Q96M19 CEP83-AS1-201ENST00000623122 2482 ntBASIC13.47□□□□□ -0.25
LINC00477Q96M19 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC13.47□□□□□ -0.25
LINC00477Q96M19 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC13.47□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 43.1 ms