Protein–RNA interactions for Protein: Q96JI7

SPG11, Spatacsin, humanhuman

Predictions only

Length 2,443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11Q96JI7 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
SPG11Q96JI7 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
SPG11Q96JI7 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
SPG11Q96JI7 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
SPG11Q96JI7 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
SPG11Q96JI7 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
SPG11Q96JI7 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
SPG11Q96JI7 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC15.18■□□□□ 0.02
SPG11Q96JI7 PNMT-202ENST00000394246 821 ntTSL 2 BASIC15.18■□□□□ 0.02
SPG11Q96JI7 AC096633.1-201ENST00000422446 749 ntBASIC15.18■□□□□ 0.02
SPG11Q96JI7 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC15.18■□□□□ 0.02
SPG11Q96JI7 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC15.18■□□□□ 0.02
SPG11Q96JI7 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
SPG11Q96JI7 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
SPG11Q96JI7 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SPG11Q96JI7 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SPG11Q96JI7 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
SPG11Q96JI7 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC15.18■□□□□ 0.02
SPG11Q96JI7 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
SPG11Q96JI7 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC15.18■□□□□ 0.02
SPG11Q96JI7 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
SPG11Q96JI7 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC15.18■□□□□ 0.02
SPG11Q96JI7 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC15.18■□□□□ 0.02
SPG11Q96JI7 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC15.18■□□□□ 0.02
SPG11Q96JI7 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC15.18■□□□□ 0.02
SPG11Q96JI7 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC15.18■□□□□ 0.02
SPG11Q96JI7 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC15.18■□□□□ 0.02
SPG11Q96JI7 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC15.18■□□□□ 0.02
SPG11Q96JI7 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SPG11Q96JI7 SNAI3-AS1-205ENST00000568633 2096 ntBASIC15.18■□□□□ 0.02
SPG11Q96JI7 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SPG11Q96JI7 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
SPG11Q96JI7 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC15.18■□□□□ 0.02
SPG11Q96JI7 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SPG11Q96JI7 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC15.18■□□□□ 0.02
SPG11Q96JI7 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SPG11Q96JI7 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
SPG11Q96JI7 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
SPG11Q96JI7 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC15.17■□□□□ 0.02
SPG11Q96JI7 BX005266.1-201ENST00000473402 457 ntBASIC15.17■□□□□ 0.02
SPG11Q96JI7 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC15.17■□□□□ 0.02
SPG11Q96JI7 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
SPG11Q96JI7 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
SPG11Q96JI7 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC15.17■□□□□ 0.02
SPG11Q96JI7 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
SPG11Q96JI7 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
SPG11Q96JI7 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
SPG11Q96JI7 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
SPG11Q96JI7 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC15.17■□□□□ 0.02
SPG11Q96JI7 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
SPG11Q96JI7 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SPG11Q96JI7 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SPG11Q96JI7 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SPG11Q96JI7 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SPG11Q96JI7 MIR149-201ENST00000384879 89 ntBASIC15.17■□□□□ 0.02
SPG11Q96JI7 AC005034.1-201ENST00000426657 489 ntBASIC15.17■□□□□ 0.02
SPG11Q96JI7 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC15.17■□□□□ 0.02
SPG11Q96JI7 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC15.17■□□□□ 0.02
SPG11Q96JI7 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC15.17■□□□□ 0.02
SPG11Q96JI7 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SPG11Q96JI7 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC15.17■□□□□ 0.02
SPG11Q96JI7 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SPG11Q96JI7 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC15.17■□□□□ 0.02
SPG11Q96JI7 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
SPG11Q96JI7 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC15.17■□□□□ 0.02
SPG11Q96JI7 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
SPG11Q96JI7 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
SPG11Q96JI7 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SPG11Q96JI7 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC15.16■□□□□ 0.02
SPG11Q96JI7 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
SPG11Q96JI7 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SPG11Q96JI7 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC15.16■□□□□ 0.02
SPG11Q96JI7 AC112698.1-201ENST00000510299 916 ntBASIC15.16■□□□□ 0.02
SPG11Q96JI7 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC15.16■□□□□ 0.02
SPG11Q96JI7 CCND1-203ENST00000536559 553 ntTSL 3 BASIC15.16■□□□□ 0.02
SPG11Q96JI7 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
SPG11Q96JI7 AL513210.1-201ENST00000629608 234 ntBASIC15.16■□□□□ 0.02
SPG11Q96JI7 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC15.16■□□□□ 0.02
SPG11Q96JI7 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SPG11Q96JI7 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
SPG11Q96JI7 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SPG11Q96JI7 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
SPG11Q96JI7 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC15.16■□□□□ 0.02
SPG11Q96JI7 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
SPG11Q96JI7 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
SPG11Q96JI7 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
SPG11Q96JI7 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SPG11Q96JI7 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
SPG11Q96JI7 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC15.16■□□□□ 0.02
SPG11Q96JI7 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC15.16■□□□□ 0.02
SPG11Q96JI7 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC15.16■□□□□ 0.02
SPG11Q96JI7 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC15.16■□□□□ 0.02
SPG11Q96JI7 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC15.16■□□□□ 0.02
SPG11Q96JI7 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC15.16■□□□□ 0.02
SPG11Q96JI7 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC15.16■□□□□ 0.02
SPG11Q96JI7 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC15.16■□□□□ 0.02
SPG11Q96JI7 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SPG11Q96JI7 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC15.16■□□□□ 0.02
SPG11Q96JI7 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC15.16■□□□□ 0.02
SPG11Q96JI7 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms