Protein–RNA interactions for Protein: Q6P9H4

CNKSR3, Connector enhancer of kinase suppressor of ras 3, humanhuman

Predictions only

Length 555 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNKSR3Q6P9H4 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CNKSR3Q6P9H4 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
CNKSR3Q6P9H4 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
CNKSR3Q6P9H4 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC19.24■□□□□ 0.67
CNKSR3Q6P9H4 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CNKSR3Q6P9H4 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CNKSR3Q6P9H4 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CNKSR3Q6P9H4 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CNKSR3Q6P9H4 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC19.23■□□□□ 0.67
CNKSR3Q6P9H4 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
CNKSR3Q6P9H4 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC19.23■□□□□ 0.67
CNKSR3Q6P9H4 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC19.23■□□□□ 0.67
CNKSR3Q6P9H4 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
CNKSR3Q6P9H4 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CNKSR3Q6P9H4 HTR5BP-201ENST00000430851 1154 ntBASIC19.23■□□□□ 0.67
CNKSR3Q6P9H4 MKNK2P1-201ENST00000437526 628 ntBASIC19.23■□□□□ 0.67
CNKSR3Q6P9H4 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC19.23■□□□□ 0.67
CNKSR3Q6P9H4 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
CNKSR3Q6P9H4 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC19.23■□□□□ 0.67
CNKSR3Q6P9H4 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC19.23■□□□□ 0.67
CNKSR3Q6P9H4 MAL2-202ENST00000531508 892 ntTSL 3 BASIC19.23■□□□□ 0.67
CNKSR3Q6P9H4 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC19.23■□□□□ 0.67
CNKSR3Q6P9H4 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC19.23■□□□□ 0.67
CNKSR3Q6P9H4 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
CNKSR3Q6P9H4 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CNKSR3Q6P9H4 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
CNKSR3Q6P9H4 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CNKSR3Q6P9H4 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CNKSR3Q6P9H4 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CNKSR3Q6P9H4 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CNKSR3Q6P9H4 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CNKSR3Q6P9H4 AC093010.1-201ENST00000473625 1624 ntBASIC19.22■□□□□ 0.67
CNKSR3Q6P9H4 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CNKSR3Q6P9H4 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CNKSR3Q6P9H4 CNN2P11-201ENST00000429351 262 ntBASIC19.22■□□□□ 0.67
CNKSR3Q6P9H4 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC19.22■□□□□ 0.67
CNKSR3Q6P9H4 RPS15P9-201ENST00000494093 319 ntBASIC19.22■□□□□ 0.67
CNKSR3Q6P9H4 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC19.22■□□□□ 0.67
CNKSR3Q6P9H4 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
CNKSR3Q6P9H4 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
CNKSR3Q6P9H4 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CNKSR3Q6P9H4 AL513190.1-201ENST00000621254 727 ntBASIC19.22■□□□□ 0.67
CNKSR3Q6P9H4 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC19.22■□□□□ 0.67
CNKSR3Q6P9H4 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
CNKSR3Q6P9H4 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CNKSR3Q6P9H4 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CNKSR3Q6P9H4 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CNKSR3Q6P9H4 ADM-208ENST00000534464 1640 ntTSL 2 BASIC19.22■□□□□ 0.67
CNKSR3Q6P9H4 SIRPAP1-201ENST00000448467 1770 ntBASIC19.21■□□□□ 0.67
CNKSR3Q6P9H4 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
CNKSR3Q6P9H4 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
CNKSR3Q6P9H4 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC19.21■□□□□ 0.67
CNKSR3Q6P9H4 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CNKSR3Q6P9H4 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC19.21■□□□□ 0.67
CNKSR3Q6P9H4 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC19.21■□□□□ 0.67
CNKSR3Q6P9H4 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CNKSR3Q6P9H4 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CNKSR3Q6P9H4 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CNKSR3Q6P9H4 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CNKSR3Q6P9H4 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC19.21■□□□□ 0.67
CNKSR3Q6P9H4 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC19.21■□□□□ 0.67
CNKSR3Q6P9H4 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
CNKSR3Q6P9H4 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
CNKSR3Q6P9H4 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC19.21■□□□□ 0.67
CNKSR3Q6P9H4 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CNKSR3Q6P9H4 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
CNKSR3Q6P9H4 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CNKSR3Q6P9H4 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CNKSR3Q6P9H4 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
CNKSR3Q6P9H4 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CNKSR3Q6P9H4 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CNKSR3Q6P9H4 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CNKSR3Q6P9H4 AC132938.5-201ENST00000624980 1813 ntBASIC19.21■□□□□ 0.67
CNKSR3Q6P9H4 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CNKSR3Q6P9H4 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
CNKSR3Q6P9H4 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CNKSR3Q6P9H4 ELL2P1-201ENST00000413990 1906 ntBASIC19.2■□□□□ 0.66
CNKSR3Q6P9H4 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CNKSR3Q6P9H4 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC19.2■□□□□ 0.66
CNKSR3Q6P9H4 KLF4P1-201ENST00000412782 1185 ntBASIC19.2■□□□□ 0.66
CNKSR3Q6P9H4 DUTP2-201ENST00000519164 463 ntBASIC19.2■□□□□ 0.66
CNKSR3Q6P9H4 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC19.2■□□□□ 0.66
CNKSR3Q6P9H4 MIR3197-201ENST00000582241 73 ntBASIC19.2■□□□□ 0.66
CNKSR3Q6P9H4 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC19.2■□□□□ 0.66
CNKSR3Q6P9H4 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC19.2■□□□□ 0.66
CNKSR3Q6P9H4 AL078644.1-201ENST00000609881 752 ntBASIC19.2■□□□□ 0.66
CNKSR3Q6P9H4 AC004790.2-201ENST00000623588 572 ntBASIC19.2■□□□□ 0.66
CNKSR3Q6P9H4 AC148477.5-201ENST00000625164 1645 ntBASIC19.2■□□□□ 0.66
CNKSR3Q6P9H4 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CNKSR3Q6P9H4 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC19.2■□□□□ 0.66
CNKSR3Q6P9H4 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CNKSR3Q6P9H4 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CNKSR3Q6P9H4 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CNKSR3Q6P9H4 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CNKSR3Q6P9H4 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CNKSR3Q6P9H4 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CNKSR3Q6P9H4 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC19.19■□□□□ 0.66
CNKSR3Q6P9H4 AL049757.1-201ENST00000616842 1596 ntBASIC19.19■□□□□ 0.66
CNKSR3Q6P9H4 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CNKSR3Q6P9H4 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 47.8 ms