Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
SHROOM1Q2M3G4 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
SHROOM1Q2M3G4 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SHROOM1Q2M3G4 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
SHROOM1Q2M3G4 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SHROOM1Q2M3G4 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SHROOM1Q2M3G4 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
SHROOM1Q2M3G4 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
SHROOM1Q2M3G4 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SHROOM1Q2M3G4 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SHROOM1Q2M3G4 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC20.87■□□□□ 0.93
SHROOM1Q2M3G4 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SHROOM1Q2M3G4 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SHROOM1Q2M3G4 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SHROOM1Q2M3G4 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC20.87■□□□□ 0.93
SHROOM1Q2M3G4 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC20.87■□□□□ 0.93
SHROOM1Q2M3G4 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
SHROOM1Q2M3G4 HLA-J-201ENST00000462773 1622 ntBASIC20.87■□□□□ 0.93
SHROOM1Q2M3G4 AC079776.2-201ENST00000641154 1609 ntBASIC20.87■□□□□ 0.93
SHROOM1Q2M3G4 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SHROOM1Q2M3G4 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SHROOM1Q2M3G4 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SHROOM1Q2M3G4 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
SHROOM1Q2M3G4 KRT18P13-201ENST00000400056 1290 ntBASIC20.87■□□□□ 0.93
SHROOM1Q2M3G4 AC092865.5-201ENST00000545435 363 ntBASIC20.87■□□□□ 0.93
SHROOM1Q2M3G4 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC20.87■□□□□ 0.93
SHROOM1Q2M3G4 TERC-201ENST00000602385 541 ntBASIC20.87■□□□□ 0.93
SHROOM1Q2M3G4 AC140113.2-201ENST00000604370 208 ntBASIC20.87■□□□□ 0.93
SHROOM1Q2M3G4 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC20.87■□□□□ 0.93
SHROOM1Q2M3G4 AD001527.2-201ENST00000622994 785 ntBASIC20.87■□□□□ 0.93
SHROOM1Q2M3G4 AC117500.6-201ENST00000624871 588 ntBASIC20.87■□□□□ 0.93
SHROOM1Q2M3G4 AC107918.4-202ENST00000641623 219 ntBASIC20.87■□□□□ 0.93
SHROOM1Q2M3G4 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SHROOM1Q2M3G4 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
SHROOM1Q2M3G4 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC20.87■□□□□ 0.93
SHROOM1Q2M3G4 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SHROOM1Q2M3G4 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
SHROOM1Q2M3G4 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
SHROOM1Q2M3G4 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
SHROOM1Q2M3G4 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SHROOM1Q2M3G4 AC104581.1-202ENST00000635932 2618 ntBASIC20.87■□□□□ 0.93
SHROOM1Q2M3G4 TNXA-203ENST00000507684 2038 ntBASIC20.87■□□□□ 0.93
SHROOM1Q2M3G4 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC20.87■□□□□ 0.93
SHROOM1Q2M3G4 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SHROOM1Q2M3G4 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SHROOM1Q2M3G4 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC20.86■□□□□ 0.93
SHROOM1Q2M3G4 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SHROOM1Q2M3G4 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC20.86■□□□□ 0.93
SHROOM1Q2M3G4 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC20.86■□□□□ 0.93
SHROOM1Q2M3G4 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC20.86■□□□□ 0.93
SHROOM1Q2M3G4 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC20.86■□□□□ 0.93
SHROOM1Q2M3G4 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC20.86■□□□□ 0.93
SHROOM1Q2M3G4 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC20.86■□□□□ 0.93
SHROOM1Q2M3G4 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC20.86■□□□□ 0.93
SHROOM1Q2M3G4 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
SHROOM1Q2M3G4 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SHROOM1Q2M3G4 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SHROOM1Q2M3G4 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SHROOM1Q2M3G4 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
SHROOM1Q2M3G4 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SHROOM1Q2M3G4 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC20.86■□□□□ 0.93
SHROOM1Q2M3G4 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
SHROOM1Q2M3G4 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC20.86■□□□□ 0.93
SHROOM1Q2M3G4 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SHROOM1Q2M3G4 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SHROOM1Q2M3G4 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SHROOM1Q2M3G4 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SHROOM1Q2M3G4 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
SHROOM1Q2M3G4 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SHROOM1Q2M3G4 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC20.85■□□□□ 0.93
SHROOM1Q2M3G4 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SHROOM1Q2M3G4 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SHROOM1Q2M3G4 AC018445.3-201ENST00000624177 1945 ntBASIC20.85■□□□□ 0.93
SHROOM1Q2M3G4 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SHROOM1Q2M3G4 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC20.85■□□□□ 0.93
SHROOM1Q2M3G4 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
SHROOM1Q2M3G4 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC20.85■□□□□ 0.93
SHROOM1Q2M3G4 AL356488.2-201ENST00000602755 427 ntBASIC20.85■□□□□ 0.93
SHROOM1Q2M3G4 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC20.85■□□□□ 0.93
SHROOM1Q2M3G4 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC20.85■□□□□ 0.93
SHROOM1Q2M3G4 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SHROOM1Q2M3G4 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC20.85■□□□□ 0.93
SHROOM1Q2M3G4 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SHROOM1Q2M3G4 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SHROOM1Q2M3G4 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC20.85■□□□□ 0.93
SHROOM1Q2M3G4 ZNF259P1-201ENST00000407656 1365 ntBASIC20.85■□□□□ 0.93
SHROOM1Q2M3G4 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
SHROOM1Q2M3G4 PMS2P7-201ENST00000506558 1336 ntBASIC20.84■□□□□ 0.93
SHROOM1Q2M3G4 POR-209ENST00000439269 1858 ntTSL 2 BASIC20.84■□□□□ 0.93
SHROOM1Q2M3G4 AC004408.2-201ENST00000623613 2777 ntBASIC20.84■□□□□ 0.93
SHROOM1Q2M3G4 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
SHROOM1Q2M3G4 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC20.84■□□□□ 0.93
SHROOM1Q2M3G4 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
SHROOM1Q2M3G4 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SHROOM1Q2M3G4 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
SHROOM1Q2M3G4 LBH-204ENST00000406087 559 ntTSL 4 BASIC20.84■□□□□ 0.93
SHROOM1Q2M3G4 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC20.84■□□□□ 0.93
SHROOM1Q2M3G4 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC20.84■□□□□ 0.93
SHROOM1Q2M3G4 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
SHROOM1Q2M3G4 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC20.84■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 95.2 ms